1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...accgttttgtgtttacgataattgattctgttgttgagttttaaagttcatagacttttatcacgttatgctgtctaagattggattgaaactgttgcagCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAATCATCCCAGCAGACTGAAGATGCTCTTTCCCAAG
species | Glycine max |
transcript | GLYMA03G28320.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAG CTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCEST: gi|13562955|gb|BG551175.1|BG551175
genomic: AGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAGgtgagaagtt ... actgttgcagCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATC
EST: AGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAG CTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCEST: gi|254316490|gb|GR828027.1|GR828027
genomic: AGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAGgtgagaagtt ... actgttgcagCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATC
EST: AGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAG CTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCEST: gi|19269047|gb|BM885303.1|BM885303
genomic: AGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAGgtgagaagtt ... actgttgcagCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATC
EST: AGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAG CTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCEST: gi|9903361|gb|BE612329.1|BE612329
genomic: AGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAGgtgagaagtt ... actgttgcagCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATC
EST: GGCTTTCGGTCATCCGAACTCCTCAAG CTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATC
genomic: GGCTTTCGGTCATCCGAACTCCTCAAGgtgagaagtt ... actgttgcagCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATC
gttcatagacttttatcacgttatgctgtctaagattggattgaaactgttgcagCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAATCATCCCAGCAGACTGAAGATGCTCTTTCCCAAG
acttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accgttttgtgtttacgataattgattctgttgttgagttttaaagttcatagacttttatcacgttatgctgtctaagattggattgaaactgttgcagCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAATCATCCCAGCAGACTGAAGATGCTCTTTCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - ttttgtg
- - - - - - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtc