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...atgatgttgtgtgctctatgtagctgacctgacctagtgggataaggctttgttgtcttttgattctccattgagttgtgatgatgttgcttctttacagGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGGAAGATTGCTAACAAACCTCCAATTAAGATGCCATTCAGAAAAGTAGAG
species | Glycine max |
transcript | GLYMA03G22450.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAACAATGTCTTTGAGGATCTCCGAAATGG GTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGEST: gi|193554994|gb|FK511827.1|FK511827
genomic: CAACAATGTCTTTGAGGATCTCCGAAATGGgtgaatatct ... ttctttacagGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTG
EST: CTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATCTCCGAAATGG GTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGEST: gi|208111440|gb|GD909158.1|GD909158
genomic: CTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATCTCCGAAATGGgtgaatatct ... ttctttacagGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTG
EST: CTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATCTCCGAAATGG GTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGEST: gi|208332495|gb|GE129908.1|GE129908
genomic: CTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATCTCCGAAATGGgtgaatatct ... ttctttacagGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTG
EST: CTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATCTCCGAAATGG GTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGEST: gi|193573679|gb|FK531013.1|FK531013
genomic: CTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATCTCCGAAATGGgtgaatatct ... ttctttacagGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTG
EST: CAACAATGTCTTTTGTAGGATCTCCGAAATGG GTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTG
genomic: CAACAATGTC-TTTG-AGGATCTCCGAAATGGgtgaatatct ... ttctttacagGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTG
ggctttgttgtcttttgattctccattgagttgtgatgatgttgcttctttacagGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGGAAGATTGCTAACAAACCTCCAATTAAGATGCCATTCAGAAAAGTAGAG
ttttgat putative branch site (score: 4)
ttgcttcttt putative PPT
ttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgttgtgtgctctatgtagctgacctgacctagtgggataaggctttgttgtcttttgattctccattgagttgtgatgatgttgcttctttacagGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGGAAGATTGCTAACAAACCTCCAATTAAGATGCCATTCAGAAAAGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- gatgttg
- - - - -tgtgctc
- - - - - - - - - -gtagctg
- - - - - - - - - - - -ctgacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agttgtg