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...ttaaactatctctttgatgtttcaaatcctgtttacaacacaaagctatgactcctattcctttggataaactttacttactttcaaagacaatgtgcagAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGAGAGAGCGAGTTTGCGGTTGGCATCAGGTCAGCATTGGTGGAAAAG
species | Glycine max |
transcript | GLYMA03G17420.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGATGCAG AAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGEST: gi|192322052|gb|FK012156.1|FK012156
genomic: AGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGATGCAGgtacatccac ... caatgtgcagAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAG
EST: AGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGATGCAG AAGTATTTGATCGAGGGATGTATGCTAGACCTGTTGGTTGGTTTGGAGGAGEST: gi|192322053|gb|FK012157.1|FK012157
genomic: AGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGATGCAGgtacatccac ... caatgtgcagAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAG
EST: AGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGATGCAG AAGTATTTGATCGAGGGATGTATGCTAGACCTGTTGGTTGGTTTGGAGGAG
genomic: AGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGATGCAGgtacatccac ... caatgtgcagAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAG
ctatgactcctattcctttggataaactttacttactttcaaagacaatgtgcagAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGAGAGAGCGAGTTTGCGGTTGGCATCAGGTCAGCATTGGTGGAAAAG
tacttac putative branch site (score: 1)
ataaactttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaactatctctttgatgtttcaaatcctgtttacaacacaaagctatgactcctattcctttggataaactttacttactttcaaagacaatgtgcagAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGAGAGAGCGAGTTTGCGGTTGGCATCAGGTCAGCATTGGTGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - tgatgtt
- - - - - - - - - - - - - -cctgttt
- - - - - - - - - - - - - - - - - -caacaca
- - - - - - - - - - - - - - - - - - - - - -agctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaac