1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatttgaaatctaaattactgccatgtcaaataacatcaatactcctcctatatattaatttccattgaaaaatctaaatgtcattctatgtcttgtttgttgcagGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCACCTCCTCGGC
species | Glycine max |
transcript | GLYMA03G03250.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTG GTTGTNNCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATEST: gi|17153766|gb|BM143699.1|BM143699
genomic: AACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGgtaatttgaa ... tttgttgcagGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGAT
EST: AACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTG GTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATEST: gi|7283427|gb|AW596035.1|AW596035
genomic: AACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGgtaatttgaa ... tttgttgcagGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGAT
EST: AACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTGCATAAGACACTTG GTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTGCGAGCCCGGCTTGAT
genomic: AACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGgtaatttgaa ... tttgttgcagGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGAT
tatattaatttccattgaaaaatctaaatgtcattctatgtcttgtttgttgcagGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCACCTCCTCGGC
tcttgttt CT-rich tract
attgaaaaatctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgaaatctaaattactgccatgtcaaataacatcaatactcctcctatatattaatttccattgaaaaatctaaatgtcattctatgtcttgtttgttgcagGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCACCTCCTCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC