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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccataattttttttaccccataccaagctgatctgtcaggagaatcctcccaactctctctcattactcaaaattctgttgacgctggtaaatttcagAAAATCAACAAGTGCAATGGCTTCTTCAAAAAATTTAACGCAGCAAAAATTGAAGGTTCAGGGGAAAGGCTATAAAGATAAATGCTATGAGCAAATAAGG

Basic information

species Glycine max
transcript GLYMA03G03120.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 9
--------------------------------------------------------------ttccataattttttttaccccataccaagctg---atctgtcaggagaatcctcccaactctctctcatt------actcaaaattctgt-tgacgctggtaaatttc-----------agAAAATCAACAAGTGCAATGGCTTCTTCAAAAAATTTAACGCAGCAAAAATTGAAGGTTCAGGGGAAAGGCTATAAAGATAAATGCTATGAGCAAATAAGG
                                                               |||  | | |  | |   |  |   |  |     |||||||  || |    |   |  || || || ||      |  |||  |  | | ||| | || |  | | |           |||||||| ||||  ||||  |||||||| |   | ||||| || || || |||||| | || |||||||||||||| ||||| ||||||||||||||||||
gtagctaccttgaactggtttccaagattgattagtatctctctatttgatgtttattatctctccccattctgatctggacattgggattccatacatctgtcctgacatgttttatacttcactgtccttggagggatgcaatgtattatatgatgttgattgaatccttattctctgcagAAAATCTACAATGGCAACAGCTTCTTCGAGGCACTTAACACAACAGAAGTTGAAGATCCAAGGGAAAGGCTATAAGGATAAGTGCTATGAGCAAATAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctcccaactctctctcattactcaaaattctgttgacgctggtaaatttcagAAAATCAACAAGTGCAATGGCTTCTTCAAAAAATTTAACGCAGCAAAAATTGAAGGTTCAGGGGAAAGGCTATAAAGATAAATGCTATGAGCAAATAAGG
                                 tgttgac  putative branch site (score: 3)
                                             taaatttca  TA-rich tract