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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcttattcaagtctggatgaatctcttttaccatattgatgttttacttggcttctaatgctagtttagtcattaagagttcattggtttatatgcagTTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTTGTGTTATCTAATAAGTGACATGCCTCAGGAAGCGCTGAACGATGCAA

Basic information

species Glycine max
transcript GLYMA03G01300.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01300.2 (Glycine max), 3'ss of exon 10
lower sequence: AT4G00710.1 (Arabidopsis thaliana), 3'ss of exon 10
aatcttattcaagtctggatgaatctcttttaccatattga-tgttttacttggcttc-taatgctagtttagtcattaagagttcattggtttatatgcagTTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTTGTGTTATCTAATAAGTGACATGCCTCAGGAAGCGCTGAACGATGCAA---
                 |  || | |  |||   | ||  | ||   ||        | ||    |||  |  | ||      ||  |||     |   ||||| || |||   |||  |||| | ||||||||||| | ||| ||||| ||| ||||||| ||||| |||||||||||  | |||||  |  | |||||||   
-----------------gtcgagttttgttttgtacataaaatgaagtagacaaacacatagcattagcctgattatc-----tttcttgaaactttgacagTTTATTGAT---GGAGGAATGATCTCTCCAACAGTGTGTGCTCGGCGTAGTCTGTGTTACCTAATGAGTGACATGCCGAAAGAAGCTTTAGATGATGCAATTC

upper sequence: GLYMA03G01300.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 3'ss of exon 10
aatcttattcaagtctggatgaatctcttttaccatattgatgttttacttggcttctaatgctagttt-agtcat--taagagttcattggtttatatgcagTTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTTGTGTTATCTAATAAGTGACATGCCTCAGGAAGCGCTGAACGATGCAA
   ||| |  ||||     ||    |   ||      |   |   |   |||||| | | |   | ||  | |  |  | |  |||  ||   | || |||||||||| |||  |||||| |||||||||||||| || | |||||| || || ||||||||||| || |||||||||||||| ||||| || ||||||||||
---cttttctaagtggaagtgtgaattagttcttgcctctctccctagtttggctacaagtagcatttagaattgtgctgatggtttcttctctgatttgcagTTCATTGATGTTGGAACCATGGTTTCTCCAACGGTTTGTGCACGCCGTAGCTTGTGTTATCTCATGAGTGACATGCCTCAAGAAGCTCTCAACGATGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9983350|gb|BE657458.1|BE657458
EST:     TTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAG                         TTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT
genomic: TTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagagtagt ... ttatatgcagTTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT
EST: gi|9984036|gb|BE658144.1|BE658144
EST:     TTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAG                         TTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT
genomic: TTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagagtagt ... ttatatgcagTTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttggcttctaatgctagtttagtcattaagagttcattggtttatatgcagTTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTTGTGTTATCTAATAAGTGACATGCCTCAGGAAGCGCTGAACGATGCAA
         ttctaat  putative branch site (score: 2)
                                            tttatat  TA-rich tract