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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattattttcttaataatcctttaatctagtagtcatcttgaaaaaatgagttattgcattagttttatcttctaactagcaaaagatactgatatacagTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAA

Basic information

species Glycine max
transcript GLYMA02G46350.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46350.2 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 3'ss of exon 10
---------aattattttcttaataatcc-tttaatctagtagtcatcttgaaaaaatgagttat-tgcattagttttatcttctaactagcaaaagatactgata-tacagTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAA
         |  |       |   |||    ||   |||    |  | |     |  | |  ||| | || |  | ||  ||||  | |   | |   |     || | ||||||||| ||||||| ||| || | |||||||| ||  |||| || |||||||||||||||| ||||||  |  || ||||||| ||||||||| | ||||
gtaggttctatatggagatgtgtcaatttgctttgcctaacttttgtttgttctacctaacatatctccactgatcttcacttcccaatgatacatcctctcactactgcagTCTGGACCTGATGAAAGATGCATCCCTGGAAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAA

upper sequence: GLYMA02G46350.2 (Glycine max), 3'ss of exon 10
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 3'ss of exon 10
aattattttcttaataatcctttaatctagta-gtcatcttgaaaaaatgagttat---tgcattagttttatcttctaactagcaaaagatactgatatacagTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAA
 ||  |||   |   |||  |||| |  |  | |  | || ||  |  | | ||     |   ||     |  ||||||  |    || |    || |  |||||||||| ||||||| |||||| |||| || || || || || || |||||||| |||||||| |||||||||||||||||||| || || ||||||||||
catattttaagtgtcaattatttagttgacaatggtagctagattacttcatttgcacctctcttgaaggtgacttctatatgttcaatg----tgtttcacagTCTGGACCTGATGAAAGAAGCATTCCGGGGAACACAGTAGCAGTTCAAGCAGATATGCCATTCAGTGGTCTTACAACTTTTGGGACTGCCTTTTTGTCAA

upper sequence: GLYMA02G46350.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv19s0090g01130.t01 (Vitis vinifera), 3'ss of exon 10
-aattattttcttaataatcctttaatctagtagtcatcttgaaaaaatgagttattgcattagttttatcttcta-actagcaaaagatactgatatacagTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAA
   || ||| |||  || |  || | | |  ||    | ||         |  | |  || || |||| || |||  |||  | ||   | ||  ||||||||||||| ||||||| |||||  |||||||||| ||  ||||||| |||||||||||||| |  |||||||| ||||||||||| || ||||||||||| |
ggcttttttactttttagt--ttgatttttttaaatttttttctctgtccatctttcccaatatttttttcatcttcactcactaatcctgcttttatacagTCTGGACCTGATGAAAGAAGTATTCCTGGAAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgagttattgcattagttttatcttctaactagcaaaagatactgatatacagTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAA
             attagttttatctt  TA-rich tract