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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatatctgtatatttgtcaaggtacattttaattttttggtgttctaaatctgtgtatggcagTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAG

Basic information

species Glycine max
transcript GLYMA02G45000.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G141258_T01 (Zea mays), 3'ss of exon 10
---------gtatgcat-atctgtatatttgtcaaggtacattttaattttttggtgttctaaatctgtgtatgg-----cagTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAG
          |    || ||||| |||| || ||  | | | |  || |  |  || |||| | | | ||  |||     ||| |||||||| ||||| ||||| ||  | |||||||||||||| || ||||||||| | || || ||||| |||||||| || || || 
gtacgtaagatcaatatgatctgcatatatg-cacagcagaatgcaaatactctgttttctgattgtttgactggtaacacagGTGGAGAAACGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGAAAAACTATCCAATCTGTATCCATGCTTGGCTTCCTTCAT

upper sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 10
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 11
-------------------------------gtatgcatatctgtatatttg--tcaaggtacattttaattttttggt--gttctaaa----------tctgtgtatggcagTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAG
                               |  |   ||  ||| || | |     | ||   | || | || | ||   | |||||             |   | |  ||| |||   |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||||| ||| | |||
gtgttacttatctcacttcacaattgctgatgattatttacttgtctactcggtcttatgtgattctttacttgtcggctcggtctaatgattggcttcctttcattttccagCTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAG

upper sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 10
---------------------------------------------gtatgcatatctg-tatatttgtcaaggtacattttaattttttggtgttctaaatctgtgtatggcagTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAG
                                               ||| |  |    |||| |  || |  |  |   || | |  |  |   ||     |   ||   ||| |||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||| ||| | |||
gtatgctggtttcttttgttttagaatgatcagtttaaactaaaaaaatgtactttaaatataatattctaattttagcata-tatactaatcagcttctctttcatagaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG

upper sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 10
lower sequence: PP1S317_10V6.1 (Physcomitrella patens), 3'ss of exon 11
-------------------------------gtatgcatatctgtatatttg---tcaaggtacattttaattttttggtgtt-ctaaatctgtgtatggcagTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAG
                               |  ||  | |   ||  | ||   |  |  |   ||  ||  ||||| |||| ||     ||  |||   ||||||||||| || || ||||| ||| | || ||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| |||
gaggtatcgttgcgcaatcatgtcgtttagagattgagtgtggataggtctgatattgatattatttcgaaccttttgctgttgcttgggttggttat---agTTGGAGAAACGACACCAATGTTATTCTTGCGGATGAAATGGGTCTTGGCAAGACGGTTCAGTCAGTGTCGATGCTTGGATTTCTTCAG

upper sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 10
lower sequence: PP1S93_123V6.1 (Physcomitrella patens), 3'ss of exon 11
-------------------------------------------------------------------------------------------------------------gtatgcatatctgtatatttgtcaaggt---acattttaattttttggtgttctaaatctgtgtatgg-cagTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAG
                                                                                                             |  ||  |   |  |  |  |||  | |     ||| || |       ||||     | ||||  ||  ||||||||| || || || ||||| ||  | || ||||||||||| ||||| || || ||||||||||| ||||||||||| ||| | |||
gtatgcaccaaattgcagcgattttgtcaacgtcacagtggcatattcactgaggacaaatgttagtggatagaaatagtggtggcagtaacgagtcactgatgtcgccgagtgggtgagttaaggtaagtctggttttggtattctactgagcccttgttgctgttatgtgggtgaacagTTGGAGGAACGACACCAATGTTATCCTTGCAGATGAAATGGGTCTTGGCAAGACAGTTCAGTCAGTCTCGATGCTTGGATTTTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttgtcaaggtacattttaattttttggtgttctaaatctgtgtatggcagTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAG
                                  ttctaaa  putative branch site (score: 2)
              tacattttaatttttt  TA-rich tract