1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttttatccttttcttggtcatggtatctaagttccgtcattcctttaccaaatttgagctaattctcttccctcttctccttgtgctggaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAATTTGAAAGAGTTCCTTCAGAATGCATATATCCATCCGGTGTTTAAGGGTG
species | Glycine max |
transcript | GLYMA02G43910.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAG GAAGCAATGATGAAGGACACATTGGAGCGCGCAAGAGAGCCAAACTTCGATEST: gi|31463488|gb|CD405516.1|CD405516
genomic: TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAGgttagtcttg ... gaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAAT
EST: TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAG GAAGCAATGATGAAGGACACATTGGAGCGCGCAAGAGAGCCAAACTTCAAT
genomic: TGTATTGCAAGGGACGATATGAACCTGCTTTCGTTAAGCATCCATTACAGgttagtcttg ... gaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAAT
tttaccaaatttgagctaattctcttccctcttctccttgtgctggaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAATTTGAAAGAGTTCCTTCAGAATGCATATATCCATCCGGTGTTTAAGGGTG
agctaat putative branch site (score: 3)
ttctcttccctcttct CT-rich tract
aaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttatccttttcttggtcatggtatctaagttccgtcattcctttaccaaatttgagctaattctcttccctcttctccttgtgctggaaacttcagGAAGCAATGATGAAGGACACATTGGAGCGTGCAAGAGAGCCAAACTTCAATTTGAAAGAGTTCCTTCAGAATGCATATATCCATCCGGTGTTTAAGGGTG
- - - - - - - - - gtcatgg
- - - - - - - - - - - - - - - - - - - -cattcct
- - - - - - - - - - - - - - - - - - - - - - - - -ccaaatt