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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atattaatagtgtcatatcacaaataaaattacgaaatgatatgtaatttcagtaacctggcaggttgtcactaaatttatcgtggttgtcaaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATGGAATATCTCATTAAGGTCGTGTGTCATACTTCTCTGGTCTTGCAATGTA

Basic information

species Glycine max
transcript GLYMA02G16010.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467102|gb|CD409130.1|CD409130
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|208213664|gb|GE010959.1|GE010959
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGCGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|37995085|gb|CF806674.1|CF806674
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|254346696|gb|GR856418.1|GR856418
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|214007958|gb|DB987846.1|DB987846
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|192311299|gb|FK003770.1|FK003770
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|213593103|gb|DB975350.1|DB975350
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|21594584|gb|BQ610200.1|BQ610200
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|7029104|gb|AW458878.1|AW458878
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|7925628|gb|AW831654.1|AW831654
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|254344596|gb|GR855467.1|GR855467
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|12773202|gb|BG238129.1|BG238129
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|10238450|gb|BE807338.1|BE807338
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|16997020|gb|BM086392.1|BM086392
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCA
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCA
EST: gi|22540559|gb|BU090402.1|BU090402
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|254323696|gb|GR836035.1|GR836035
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|21995150|gb|BQ786678.1|BQ786678
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
EST: gi|31459683|gb|CD401711.1|CD401711
EST:     ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG                         GGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG
genomic: ATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGgtaaggatgg ... caaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttcagtaacctggcaggttgtcactaaatttatcgtggttgtcaaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATGGAATATCTCATTAAGGTCGTGTGTCATACTTCTCTGGTCTTGCAATGTA
                        cactaaa  putative branch site (score: 2)
                         actaaatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atattaatagtgtcatatcacaaataaaattacgaaatgatatgtaatttcagtaacctggcaggttgtcactaaatttatcgtggttgtcaaattatagGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATGGAATATCTCATTAAGGTCGTGTGTCATACTTCTCTGGTCTTGCAATGTA

- - - - - - -catatca
- - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - -tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cctggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg