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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggcagtgcttaagataatgttttatatttttcctttcatattaatgacttaattattggagtttccatgtaccacttatttagaaaaccatgtgtttggttattaagttgatctgataatgatactgtgatgatatttattatgatgtaagttattgaagctgtcttgttacttgggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG

Basic information

species Glycine max
transcript GLYMA02G15070.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G15070.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os09g28570.3 (Oryza sativa), 3'ss of exon 10
gtgggcagtgcttaagataatgttttatatttttcctttcatattaatgacttaattattggagtttccatgtaccacttatttagaaaaccatgtgtttggttat-taagttgatctgataatgatactgtgatgatatttat-tatgatgtaagttattgaagctgtcttgttacttgggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG
                                                        ||||  |  ||| ||| | |   | | |   | || |  |      | |  |       ||    ||||   |  |      ||  || ||| |  | |  | ||||   |   |  ||| |    | || ||||  | || |||  |||||||||||| ||||||||||| || || ||||| ||||| ||||| ||||||||||| |||||||| || || |||
-------------------------------------------------------gtattaca--ttctatgcatc---tgtgttacacactaaattaccaatgaccttcaccactccttcaatggatcatttccagcatccatctatcagttcaccttttgactttacatcttta-tgattaaagGTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATCCAGAGGTCGTTGCTATGCTAACATCAGGATTGACTGCTTCAATTGCCCTTGAGAAG

upper sequence: GLYMA02G15070.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G368058_T01 (Zea mays), 3'ss of exon 5
gtgggcagtgcttaagataatgttttatatttttcctttcatattaatgacttaattattggagtttccatgtaccacttatttagaaaaccatgtgtttggttattaagttgatctgataatgatactgtgatgatatttattatgatgtaagttattgaagctgtcttgttacttgggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG
                                                                              |  |     |||  |  | ||   | |     |  || |      |  ||  | ||  |  | |  || |  ||  || |||         | || ||   |  ||||| |  | |||  |  | |||| ||||| |||||||| || || || ||||| ||||| ||||| ||||||||||| || || ||||| ||||||
------------------------------------------------------------------------------tcctccgtcaaatgagattttctctaacctcttgcattttg----ggcaccattat--ttctgacaataacatatttttttgctttatatatctttctgatgtaagATTTCAGCCAAAAGTCTTATTCCAGTGCCAAGACCAGACCCAGAGGTGGTTGCTATGCTAACATCAGGATTGACTGCATCCATCGCTCTTGAAAAG

upper sequence: GLYMA02G15070.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G49670.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgggcagtgcttaagataatgttttatatttttcctttcatattaatgacttaattattggagtttccatgtaccacttatttagaaaaccatgtgtttggttattaagttgatctgataatgatactgtgatgatatttattatgatgtaagttattgaagctgtcttgttacttgggat--agATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG
                                                                                                || ||   | ||   | | |  |||     |    | ||| |||| | | |   | ||| ||         ||   |  || ||||  || |  |||| || |||| |||||| || || ||||||||||| |||||||||||||||||||| |||||||| ||||| | ||| || || ||||||
------------------------------------------------------------------------------------------------gtatgagaacta--ctaaacc-atatgagcaacaagttgacatttttcaaggcttcagtgatcatgtgaacctgtctgttttggatttagGTATCTTCTAAGCATGTTCTTCCTGTTCCAAGACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTGAAAAG

upper sequence: GLYMA02G15070.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv03s0063g00610.t01 (Vitis vinifera), 3'ss of exon 10
gtgggcagtgcttaagataatgtttta-tatttttcctttcatattaatgacttaattattggagtttccatgtaccacttatttagaaaaccatgtgtttggttattaagttgatc-tgataatgatactgtgatgatatttattatgatgtaagttattgaagctgtcttgttactt----gggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG
                ||| |   ||| ||||||| |||| | ||     ||    ||  ||   ||    |||   | || || |   ||     |  ||| | || |  ||| |  | || | | |||  |    | | |  | || ||  || || | | || || |   ||  ||      | ||| ||||||| || ||    ||||| ||| | ||||||||||| ||||||||||| ||||| || || ||| | || || ||||||||| ||||||||
--------------gtatactaccttaatatttttgctttta-atgttctacagggttggtgtcattattttgt-ttattttttaattcaattgc-tacttgatcataattttgttaataattaagttacc-tatcaaaaatgttaataattaaatttgtcggagttgaccccttttttttgcatgttagGTTCCTTCCAAGCACATCCTTCCCGTGGCAAGACCAGATCCAGAAGTTGTTGCGATGCTAACCTCAGGACTTACAGCATCAATTGCTTTAGAAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125716|gb|BG316286.1|BG316286
EST:     GTATGCCTTGTGCATTCATGACTTTTGGAGGCTACGCTGAATTCTTAATG                         ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT
genomic: GTATGCCTTGTGCATTCATGACTTTTGGAGGCTACGCTGAATTCTTAATGgtgggcagtg ... cttgggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT
EST: gi|213602767|gb|DB968937.1|DB968937
EST:     GGAGGCTACGCTGAATTCTTAATG                         ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT
genomic: GGAGGCTACGCTGAATTCTTAATGgtgggcagtg ... cttgggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT
EST: gi|23051289|gb|BU577071.1|BU577071
EST:     GTATGCCTTGTGCATTCATGACTTTTGGAGGCTACGCTGAATTCTTAATG                         ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT
genomic: GTATGCCTTGTGCATTCATGACTTTTGGAGGCTACGCTGAATTCTTAATGgtgggcagtg ... cttgggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT
EST: gi|7926508|gb|AW832534.1|AW832534
EST:     GTATGCCTTGTGCATTCATGACTTTTGGAGGCTACGCTGAATTCTTAATG                         ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT
genomic: GTATGCCTTGTGCATTCATGACTTTTGGAGGCTACGCTGAATTCTTAATGgtgggcagtg ... cttgggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT
EST: gi|19935164|gb|BQ080194.1|BQ080194
EST:     GTATGCCTTGTGCATTCATGACTTTTGGAGGCTACGCTGAATTCTTAATG                         ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT
genomic: GTATGCCTTGTGCATTCATGACTTTTGGAGGCTACGCTGAATTCTTAATGgtgggcagtg ... cttgggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatgatatttattatgatgtaagttattgaagctgtcttgttacttgggatagATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG
      atatttattatgatgt  TA-rich tract