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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtaatatttgcttttaatctaatatactgttaccatttaagttgatctaccaaacataacttacaagtaacgactaacatattggcatgcatgaaacagGTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTCCATGCTATCTCTCTACTTGCTCCTGTGATGGGCTCTGAAATCACTCGTT

Basic information

species Glycine max
transcript GLYMA02G10790.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10790.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 3'ss of exon 9
--tgtaatatttgcttttaatctaatatactgttaccatttaagttgatctaccaaacataacttacaagtaacgactaacatattggcatgcatgaaacagGTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTCCATGCTATCTCTCTACTTGCTCCTGTGATGGGCTCTGAAATCACTCGTT
   |  |||| ||  |||   |  ||    | | |  ||  | | |  | || ||    |  || |  | |  | |     ||    |           ||||| ||||||||||||| |||| | |||||||||||||| |||||  | || |  || || || |||||||| ||||  |||||| | ||||| |||  ||
aacgccatatatggattttgcc--attctgtttgaatatggacgatcttttatcatctttttctcatcattttctaaagcaatgcaagttccacctgggcagGTCTTGGAGATGATTAACAATTCACACTATTTGTATCGGATGACTGTTCTACGGGCAATTTCCCTACTTGCCCCTGCCATGGGCGCAGAAATTACTTATT

upper sequence: GLYMA02G10790.2 (Glycine max), 3'ss of exon 10
lower sequence: EFJ35758 (Selaginella moellendorffii), 3'ss of exon 9
tgtaatatttgcttttaatctaatatactgttaccatttaagttgatctaccaaacataacttacaagtaacgactaacatattggcatgcatgaaacagGTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTCCATGCTATCTCTCTACTTGCTCCTGTGATGGGCTCTGAAATCACTCGTT
                                                    |    |   ||    || | ||       |  |  |||| |    ||||| ||||||||||||| ||||||||||||||| || ||  |||| |||||  |||| || ||| |  | || |||||  | ||||| ||| | ||  |  
--------------------------------------------------gtatgagttttttgtgtgtgaagatctcttgaaagtaatgcttttctcagGTGTTGGAGATGATTAACAATCCTCACTATTTATACCGGCTGACGATACTGTATGCCATTTCTTTGTTCGCCCCTGTTGTTGGCTCCGAAGTGACATGCC

upper sequence: GLYMA02G10790.2 (Glycine max), 3'ss of exon 10
lower sequence: EFJ10709 (Selaginella moellendorffii), 3'ss of exon 9
tgtaatatttgcttttaatctaatatactgttaccatttaagttgatctaccaaacataacttacaagtaacgactaacatattggcatgcatgaaacagGTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTCCATGCTATCTCTCTACTTGCTCCTGTGATGGGCTCTGAAATCACTCGTT
                                                    |    |   ||    || | ||       |  |  |||| |    ||||| ||||||||||||| ||||||||||||||| || ||  |||| |||||  |||| || ||| |  | || |||||  | ||||| ||| | ||  |  
--------------------------------------------------gtatgagttttttgtgtgtgaagatctcttgaaagtaatgcttttctcagGTGTTGGAGATGATTAACAATCCTCACTATTTATACCGGTTGACGATACTGTATGCCATTTCTTTGTTCGCCCCTGTTGTTGGCTCGGAAGTGACATGCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15202124|gb|BI425235.1|BI425235
EST:     TAGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAACACATAATTCCACAG                         GTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTC
genomic: TAGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAACACATAATTCCACAGgttcatgtct ... catgaaacagGTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTC
EST: gi|58015550|gb|CX702292.1|CX702292
EST:     TAGCTGAAGAATTTGGTCNTGAGTGGGCTATGCAACACATAATTCCACAG                         GTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTC
genomic: TAGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAACACATAATTCCACAGgttcatgtct ... catgaaacagGTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTC
EST: gi|6666156|gb|AW277615.1|AW277615
EST:     TAGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAACACATAATTCCACAG                         GTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTC
genomic: TAGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAACACATAATTCCACAGgttcatgtct ... catgaaacagGTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaccaaacataacttacaagtaacgactaacatattggcatgcatgaaacagGTTTTGGAGATGATTAGCAATCCTCACTATTTGTATCGAATGACCATACTCCATGCTATCTCTCTACTTGCTCCTGTGATGGGCTCTGAAATCACTCGTT
                           gactaac  putative branch site (score: 1)
                              taacatatt  TA-rich tract