Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctatgatacttttctgtgtacttatgaatcagatctcctcgttgacctttgtcaagttgtttctaatactttgtcacttcattctttgtctcctatgaaatagCCTGGATATGGTGATGCAGGAGGCATGCATTCTGGAGCCAGGGCAG

Basic information

species Glycine max
transcript GLYMA02G08870.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5057797|gb|AI736273.1|AI736273
EST:     ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAA                         CCTGGATATGGTGATGCAGGAGGCATGCATTCTGGAGCCAGGGCAG
genomic: ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAAgtatgttcta ... tatgaaatagCCTGGATATGGTGATGCAGGAGGCATGCATTCTGGAGCCAGGGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcaagttgtttctaatactttgtcacttcattctttgtctcctatgaaatagCCTGGATATGGTGATGCAGGAGGCATGCATTCTGGAGCCAGGGCAG
            ttctaat  putative branch site (score: 2)
                         tcacttcattctttgt  putative PPT
           tttctaata  TA-rich tract