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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttgtatggtgaatgtttgaatcattacattgatgaatgctgaatatgttttgataatgagtttaggtgtgatgtaatacttaccttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG

Basic information

species Glycine max
transcript GLYMA02G07510.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 11
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 10
-----------------------------------------------tttttgtatggtgaatgtttgaatcattacattgatgaatg---ctgaatatgttttgataatgagtttaggtg-tgatgtaatacttaccttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG---------
                                                ||  |  |  |     | |  || ||||  ||||| | |    |  |  ||| | ||    |  |  |||  | | |  ||||  |   |||||| ||| ||||| || |||||  |||| ||||||||||| ||  | |||||||||||||| || || ||||||||||| || |||||||||||  ||| ||         
gttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaa-cagGTTTTCGATGCGCTAAGAACAACAATGTTCATATTAGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAATGAGA

upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 10
tttttgtatggtgaatgtttgaatcattacattgatgaatgctgaatatgttttgataatgagtttagg----tgtgatgtaatactt-accttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG
     |  |  |  ||| ||  | || |       |  || ||   | |   ||  |  |||||||||     | | ||    | ||| ||  |     ||||||||||||||| |||||||||||||||||||||| || |||||||||| |||||| || |||||||| |||||||||||||||||  ||||||
----aggcttcttgatgcttatagcaatgttcaattctattctctctctcccttc-tcttgagtttagacccatataataagctgcttcactgtttctcaagcagGTATTTGATACATTAAGGACAACAATGTTTATACTAGGAATGATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399979|gb|EV269850.1|EV269850
EST:     CAAGAATATCAG                         GTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTG
genomic: CAAGAATATCAGgtacttcctc ... ctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgttttgataatgagtttaggtgtgatgtaatacttaccttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG
                                  tacttac  putative branch site (score: 1)
                                    cttaccttcct  CT-rich tract
     ttttgataat  TA-rich tract