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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttctgatatcgtctattttcaaaatctatagtttttgcatatggaattcactctaatataattcaaggattttatattgatagGTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAG

Basic information

species Glycine max
transcript GLYMA02G06720.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06720.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 11
gtatccttctgatatcgtctattttcaaaatctatagtttttgcatatggaattcactctaatataattcaaggattttatattga---tagGTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAG
|||    ||| ||| | |||||   |||| | | ||    |||| |  | | ||       || |     ||  |   |   ||||    |||||  ||||||| || |||||||||||||| |||||||| ||||||||  |||| ||||
gtacatctcttataccctctatag-caaattgttta---cttgctttagtagttttgatgcatgtggcaaaaacaaccttccttgaatacagGTTGCTGACTGGGTCGATCCTGGCTCACGAGATGATGCATGCATGGCTCCGACTGAAAG

upper sequence: GLYMA02G06720.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S231_3V6.2 (Physcomitrella patens), 3'ss of exon 10
--------------------------------------------------------------------------------------gtatccttc--tgatatcgtctattttcaaaatctatagtttttgca--tatggaattcactctaatataattcaaggattttatattgatagGTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAG
                                                                                      |  |||| |  ||| |     ||  | ||   |  |||  | ||| |  | || | || | | | | |||| || |     || |      || || || || || || ||||||||||||||| |||||||||||||| || | ||  | |
gtgtgctctcatccttacttcgtaaatctttaccagttgataatgatttatggcttttactaccacacacaagcgcacatgtcaatgcttcctcccatgaaactacataact-cagcctgaataactcttgtagttgtgcatttgagtttga-ataactcgaatcgcttttgagtgcagATTGTTAACAGGGTCTATCCTGGCTCACGAACTGATGCACGCATGGATTCGTCTCGACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttttgcatatggaattcactctaatataattcaaggattttatattgatagGTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAG
                      ctctaat  putative branch site (score: 3)
                         taatataattcaagga  TA-rich tract