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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatcagctttcctgtgatcaataccatttagaaacttagtattttcatttcagtgatttaacagtgttaagttggacaaatttgtgggattatggcagGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGG

Basic information

species Glycine max
transcript GLYMA02G06720.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06720.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 3'ss of exon 15
----------------------------------------gtactatc--agctttcc----tgtgatcaat--accatttagaaacttagtattttcatttcagtgatttaacagtgttaagttggaca--aatttgtgggattatggcagGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGG
                                         | ||||   |||  ||     |||||| |||  |   | |  |||  | | | || |  ||       || | | ||  ||| | || |  |||      |  | ||||||||||| | |||||||| |  || |||||||| || || ||||| || |||||| |||||||||| |||||||||||   | |  || ||||  |  | | 
gtacttatccgttcagtgacaaatattgcgttgacaattgtttctattcaagccctctgaaatgtgattaatctatgttcttcaaatgttgcacttcctgttttcca--ttcataatgagaagctagaaattaataaccaagtgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGAATCAGAGATACATTCAAGCTCTGGTAACAATGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatttcagtgatttaacagtgttaagttggacaaatttgtgggattatggcagGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGG
            atttaac  putative branch site (score: 3)
          tgatttaa  TA-rich tract