1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgtgatgtgtgaaacccctgcagtacttcaatataaaatttcaatcaacattttactgcttcgacttgatataatcctaaccaggcattatcctctactgtagCTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGTGTAGAGCTAGACTGGAGAGGTATCGCCGAACAGCTGAGCGTGCA
species | Glycine max |
transcript | GLYMA02G06160.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCAGATATCCATATTCCTCAGTTTATGGTG CTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGTEST: gi|21888118|gb|BQ741331.1|BQ741331
genomic: TCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatg ... tctactgtagCTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGT
EST: CTCTACCTCCTTCACTCATTCCAGATATCCATATTCCTCAGTTTATGGTG CTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGT
genomic: CTCTACCTCCTTCACTCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatg ... tctactgtagCTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGT
cattttactgcttcgacttgatataatcctaaccaggcattatcctctactgtagCTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGTGTAGAGCTAGACTGGAGAGGTATCGCCGAACAGCTGAGCGTGCA
tcctaac putative branch site (score: 1)
ttatcctct putative PPT
ttgatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgatgtgtgaaacccctgcagtacttcaatataaaatttcaatcaacattttactgcttcgacttgatataatcctaaccaggcattatcctctactgtagCTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGTGTAGAGCTAGACTGGAGAGGTATCGCCGAACAGCTGAGCGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA