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...catttgaatttataaccctgtgcagacaactagcattccaccactagttcaaccccagttactttctgtaatactgattaccttgaaattcaatttatagGCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGAGCAACTCTCATTATGGATGCAAAGAATGTATACAATGGAATCAGCCGCT
species | Glycine max |
transcript | GLYMA02G04920.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTTGGGCATTTATAGAG GCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGAEST: gi|254335102|gb|GR844887.1|GR844887
genomic: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTTGGGCATTTATAGAGgtattttgta ... caatttatagGCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGA
EST: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTTGGGCATTTATAGAG GCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGAEST: gi|207770100|gb|GD742274.1|GD742274
genomic: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTTGGGCATTTATAGAGgtattttgta ... caatttatagGCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGA
EST: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTCGGGCATTTATAGAG GCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGAEST: gi|254327755|gb|GR834720.1|GR834720
genomic: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTTGGGCATTTATAGAGgtattttgta ... caatttatagGCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGA
EST: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTTGGGCATTTATAGAG GCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGAEST: gi|19347302|gb|BM892182.1|BM892182
genomic: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTTGGGCATTTATAGAGgtattttgta ... caatttatagGCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGA
EST: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTTGGGCATTTATAGAG GCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGA
genomic: GGTCTAATGAGTCAGGACTTTTCCTCTCACTCTGTTGGGCATTTATAGAGgtattttgta ... caatttatagGCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGA
agttcaaccccagttactttctgtaatactgattaccttgaaattcaatttatagGCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGAGCAACTCTCATTATGGATGCAAAGAATGTATACAATGGAATCAGCCGCT
tactgat putative branch site (score: 2)
ttgaaattcaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttgaatttataaccctgtgcagacaactagcattccaccactagttcaaccccagttactttctgtaatactgattaccttgaaattcaatttatagGCTGCCTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCTGGGTGGAGCAACTCTCATTATGGATGCAAAGAATGTATACAATGGAATCAGCCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - -aaccctg
- - - - - - - - - - tgcagac
- - - - - - - - - - - - - - - - - -ttccacc
- - - - - - - - - - - - - - - - - - - - - - - - -caacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgaa