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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaagatctctttttttcttttgttaccttttagtttgtactctgtacatgtgttccctgccatgtcactgcctctgctctggccattaacgaaagaaaaaaccaaaacatggaggcagtaatactattgcttgggacatgatttacctgagttaatattgcagGGGGGAAATAACATTCATGTTGATGGTGTTAATGCCATTGCTCAAGTTTTAAAAGATAACTTAGTTATTACCACT

Basic information

species Glycine max
transcript GLYMA02G03410.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193712424|gb|FK650147.1|FK650147
EST:     AAATTGCAGTTGCTTTAAAGGAAAATCGGTCAATATCAACGCTGGATCTG                         GGGGGAA-TAACATTCATGTTGATGGTGTTAATGCCATTGCTCAAGTTTTA
genomic: AAATTGCAGTTGCTTTAAAGGAAAATCGGTCAATATCAACGCTGGATCTGgtaacaagat ... aatattgcagGGGGGAAATAACATTCATGTTGATGGTGTTAATGCCATTGCTCAAGTTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggaggcagtaatactattgcttgggacatgatttacctgagttaatattgcagGGGGGAAATAACATTCATGTTGATGGTGTTAATGCCATTGCTCAAGTTTTAAAAGATAACTTAGTTATTACCACT
                                         agttaat  putative branch site (score: 4)
          taatactatt  TA-rich tract