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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattctctttcagtcgaagcaaaccttgaaagttttactcactcgtgaaataattatgaatattctttttttgtggtaaatttcaattatttggttgtaaagtgagattaagaattgaatgcataatcgtgctactcacttgcctatgttgattgattgattgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTGTCGACATATGCGGCTTGACTTTTTGGTGCATCATTAACCATCTCTCATG

Basic information

species Glycine max
transcript GLYMA02G01750.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396184|gb|AI495181.1|AI495181
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|207685540|gb|GD670314.1|GD670314
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|207751268|gb|GD722449.1|GD722449
EST:     TTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAGCTCTAAAAGAAAAATATCTT
genomic: TTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCT-AAAGAAAAATATCTT
EST: gi|254316708|gb|GR828245.1|GR828245
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193725740|gb|FK657682.1|FK657682
EST:     ACTTAGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTT
genomic: ACTT-GACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTT
EST: gi|254328074|gb|GR835039.1|GR835039
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|192331369|gb|FK021037.1|FK021037
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|17401430|gb|BM178212.1|BM178212
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|57575003|gb|CX547978.1|CX547978
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193513366|gb|FK471474.1|FK471474
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|9901204|gb|BE610172.1|BE610172
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193316089|gb|FK282659.1|FK282659
EST:     GATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAG-AAAATATCTTG
genomic: GATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|16346217|gb|BI971812.1|BI971812
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|6341820|gb|AW164569.1|AW164569
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|254319257|gb|GR830605.1|GR830605
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|58016979|gb|CX703721.1|CX703721
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208188903|gb|GD987311.1|GD987311
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|15812447|gb|BI784722.1|BI784722
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|6481679|gb|AW200950.1|AW200950
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|254345056|gb|GR855713.1|GR855713
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|85056960|gb|DW585092.1|DW585092
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208083488|gb|GD880974.1|GD880974
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208261005|gb|GE059929.1|GE059929
EST:     CTAAGAAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAGCTCTAAAGAAAAATATCTTG
genomic: CTAAG-AACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|192333635|gb|FK026880.1|FK026880
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208094210|gb|GD891555.1|GD891555
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATAT
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCC-TGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATAT
EST: gi|208202708|gb|GE001776.1|GE001776
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208191581|gb|GD991459.1|GD991459
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193476232|gb|FK441725.1|FK441725
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208318650|gb|GE111131.1|GE111131
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208083404|gb|GD883522.1|GD883522
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193441149|gb|FK409970.1|FK409970
EST:     TAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: TAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193516116|gb|FK473798.1|FK473798
EST:     CGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208262546|gb|GE060089.1|GE060089
EST:     CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG                         TCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAGgtaatattct ... attgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaatgcataatcgtgctactcacttgcctatgttgattgattgattgatgcagTCCATTAGTCCTGCCAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTGTCGACATATGCGGCTTGACTTTTTGGTGCATCATTAACCATCTCTCATG
                                     attgatt  TA-rich tract