Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttctctttcctgactgaatttttataaataatattgttataattatttccaattgaaaattatattaagctatattgtttgttcctggtgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCA

Basic information

species Glycine max
transcript GLYMA02G01220.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01220.3 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os01g19150.1 (Oryza sativa), 3'ss of exon 11
agttctctttcctgactgaatttttataaataatattgttataattatttccaattgaaaattatattaagctatattgtttgttcctggtgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCA
        |   |         | ||| |  ||   | || ||| | |||| |  |    ||| ||   | ||   || |||  |||| |  |    ||| ||||||  ||   ||| |||||||| |||||||| || ||||||||| ||||| |||||||||| |||   ||||||||||| || || ||||   |  
-------gtaagtattaatgcatatatcaggaaatctcttgtaaatgtttctatgtactcattttac--atcttcctttttttctcctcgcac----cagTTGGAGGTGTTAATTCATCCATTCTTCGATGAACTACGAGATCCAAATGCTCGCTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTC

upper sequence: GLYMA02G01220.3 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os05g04340.1 (Oryza sativa), 3'ss of exon 11
------------------------------------------------agttctctttcctgactgaatttttataaataatattgttataattatttc-caattgaaaattatatta-----------------agctat--attgtttgttcctgg---tgctat-gcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCA
                                                |||| |  ||| || |   | | || |   | | ||| || |||||| |||   ||  |||  |  | |                  || ||   |||||   || ||     ||| ||  |||  ||| || |||   || || ||||| |||||||| ||||||||||| || ||| |||| || || |||| |||||| || ||||| |||||||   || 
gtgagtgttgtcgttgcactatttgagccaacaccattttttagagaaagttttagttcttggcatcactattgtg--ttacatttttctaattacttcatcatacaaacatgcactgccttgccaagtactagtagttacagattgtgcatttctttatttgccattacagTCGGAAGCATTGATCCATCCCTTCTTCGATGAACTCCGTGATCCAAACACCCGCTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCC

upper sequence: GLYMA02G01220.3 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G075992_T01 (Zea mays), 3'ss of exon 6
agttctctttcctgactgaatttttataaataatattgttataattatttccaattgaaaattatattaagctatattgtttgttcctggtgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCA
                    | | ||| ||  |  |  |  |    | | |   ||| |  | | | |||  ||| | |||| |||    | |||  ||| ||||||| ||    || ||||||||||||||||||||  | |||||  | || ||||||||||| |||| ||||||||  ||||| || || | | | |
-------------------gtatgtattaaacacttcatcttgggaaatcc--gttgcacttaacaataa--tatttagtttcttctctct-cta-acagTTGGAGGCGTTAATCCATCCATTCTTTGATGAACTGCGGTACCCAAACTCACGTCTACCAAATGGCCGTTCCCTTCCCCATCTCTTCAATTTTAAACCTA

upper sequence: GLYMA02G01220.3 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 11
----agttctctttcctgactgaatttttataaataatattgttataattatttccaattgaaaattatattaagctatattgtttgttcctggtgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCA
     | | |  ||||||   |||    | | || |   |||     |   | | |  |  ||  | |  ||  |   |  ||||| ||  |  | |||||||||||||||| |||   || || || |||||||| || ||||| ||||| || || || |||||||| |||| |||||||||| | || |||||||   |  
tatatgctgtgattcctg---gaaggcatgtgaagacagttggatccaacctcttctttcaaacttgaatttttgacttgatgtttatttatt-ttctatgcagCTGGAGGCTTTGATCCATCCCTTTTTTGATGAGCTACGTGAGCCAAACACCCGTCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208310212|gb|GE107630.1|GE107630
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGACCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193667331|gb|FK608071.1|FK608071
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|17023669|gb|BM094703.1|BM094703
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193366095|gb|FK329060.1|FK329060
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|16349285|gb|BI974880.1|BI974880
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193392613|gb|FK358772.1|FK358772
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|207820675|gb|GD792526.1|GD792526
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193351994|gb|FK316359.1|FK316359
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193359920|gb|FK324242.1|FK324242
EST:     CTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: CTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193356255|gb|FK321428.1|FK321428
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|207797958|gb|GD768522.1|GD768522
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|13791263|gb|BG653854.1|BG653854
EST:     ATCTCGTTTTTTGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193349034|gb|FK318152.1|FK318152
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|207749260|gb|GD720090.1|GD720090
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|208218102|gb|GE016120.1|GE016120
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|13562753|gb|BG550973.1|BG550973
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|208249791|gb|GE045470.1|GE045470
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|9901022|gb|BE609988.1|BE609988
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|7590534|gb|AW706284.1|AW706284
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttccaattgaaaattatattaagctatattgtttgttcctggtgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCA
       aattgaaaattatatt  TA-rich tract