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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtaatgttatatttgcctgtccatttatgtgatatttcattgtgatattcatatatatgaaccttcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT

Basic information

species Glycine max
transcript GLYMA02G01220.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01220.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 10
---------------gtattgtaatgttatatttgcctgtccatttatgtgatatttcattgtgatattcatatatatgaaccttcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT
                   | | |  | |  | |||    |   |||     |     ||  |||| |||||   |||    | ||  ||||||||||| || |||||  | || |||||||| || ||||| |||||||| || ||||| |||||||| || |||||  ||||||||
gtactggatagaagcaggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctc-ctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTGCTGCAGTACTCTCCGAACCTTCGTAGCACAGCT

upper sequence: GLYMA02G01220.2 (Glycine max), 3'ss of exon 10
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 9
gtattgtaatgttatatttgcctgtccatttatgtgatat-ttcattgtgatattcatatatatgaaccttcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT
                              || |  |  | ||  ||| |    || | ||  |     |    |  ||| | ||||||||| |  | ||||| |||||||||||||| ||||| || ||||| |||||||| || ||||| || || |   | 
-------------------------gtgcgtaggcaacttctttgttggggcggtcgtttacgtag---taacgtggcagGTGTTTCACAAGAGAATGCCTCCGGAGGCTGTGGATCTTGTCTCGAGACTACTCCAATACTCGCCTAATCTGCGCTGTAGTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193455275|gb|FK419252.1|FK419252
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|193667331|gb|FK608071.1|FK608071
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|15286220|gb|BI470111.1|BI470111
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|10254836|gb|BE822602.1|BE822602
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|298195934|gb|HO044325.1|HO044325
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|9901022|gb|BE609988.1|BE609988
EST:     TTACACGGAGTT-AAATTTTCACAGAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: TTACACCGAGTTCAAATTTCCACA-AATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|16349285|gb|BI974880.1|BI974880
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|207820675|gb|GD792526.1|GD792526
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|207797958|gb|GD768522.1|GD768522
EST:     TACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: TACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|13791263|gb|BG653854.1|BG653854
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTTTTTTGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|207749260|gb|GD720090.1|GD720090
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|7590534|gb|AW706284.1|AW706284
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|208218102|gb|GE016120.1|GE016120
EST:     TACTACCGAGTTCTAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: TAC-ACCGAGTTC-AAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|13562753|gb|BG550973.1|BG550973
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|9259545|gb|BE347700.1|BE347700
EST:     ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|37994511|gb|CF806247.1|CF806247
EST:     ATTACACCGAGTTCAAATTTCCACACATTAAAGCTCATCCATGGCATAAG                         ATATTTCACAAGC
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatttatgtgatatttcattgtgatattcatatatatgaaccttcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT
                                          ccttcatt  CT-rich tract
            atatttcattgtgata  TA-rich tract