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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttttcaatctcctattgtgaattatgcacagaaatttatgtacatatacgaaactttctaattttcttgtaataaatggtatgtctactaacgtgaataattcacatcaattaaggtacatctgcaattatctgattttttttgtaacatgtcatctcttttctttgaagcagACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTCAAACTGGGCTATTCATAAATTCTTGTTTTGCTCATTGTCAGTCTGAGAG

Basic information

species Glycine max
transcript GLYMA02G00930.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932822|gb|BU549961.1|BU549961
EST:     CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAG                         ACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
genomic: CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAGgtgttttcaa ... tttgaagcagACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
EST: gi|193424232|gb|FK386385.1|FK386385
EST:     CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAG                         ACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
genomic: CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAGgtgttttcaa ... tttgaagcagACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
EST: gi|193551911|gb|FK506526.1|FK506526
EST:     CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAG                         ACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
genomic: CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAGgtgttttcaa ... tttgaagcagACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
EST: gi|22931797|gb|BU548936.1|BU548936
EST:     CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAG                         ACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
genomic: CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAGgtgttttcaa ... tttgaagcagACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
EST: gi|10847673|gb|BF070320.1|BF070320
EST:     CAAATCGACCCATGCAAATTGTAGCTCATCTCTAATGCAGTTCCTCCAAG                         ACTTCAGAAATCAAATGCTTAGTGACATTACAGACTTCTCGAGCTCATCTC
genomic: CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAGgtgttttcaa ... tttgaagcagACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
EST: gi|193380557|gb|FK347339.1|FK347339
EST:     CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAG                         ACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC
genomic: CAAATCGAACCATGCAAATTGTAGCTCATCTCAAATGCAGTTCCTCCAAGgtgttttcaa ... tttgaagcagACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctgcaattatctgattttttttgtaacatgtcatctcttttctttgaagcagACTTCAGAAATCAAATGCTTAGTGACATTAAAGACTTCTCGAGCTCATCTCAAACTGGGCTATTCATAAATTCTTGTTTTGCTCATTGTCAGTCTGAGAG
                       ttgtaac  putative branch site (score: 2)
                               tgtcatctcttttctt  CT-rich tract
       aattatctgatttttt  TA-rich tract