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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagaatttgcaagtgaatttttttcatagtttgttttattttgggcattttctgcaaagacatcctaatctacatattatacatattcttatacctacagGCACGCTTGATACTATTGTTTCCTGTAATGAGATGAGATCGTCATAGGTAGAAGCTACTGAAATCATTGTTCTCTATGGGCCATGAAATCATTGTTCTCA

Basic information

species Glycine max
transcript GLYMA01G42360.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669397|gb|BE190504.1|BE190504
EST:     CAAAAACAAGATTGATTACATTACCAGAAGGAAGTAATGCTTAAATGGAG                         GCACGCTTGATACTATTGTTTCCTGTAATGAGATGAGATCGTCATAGGTAG
genomic: CAAAAACAAGATTGATTACATTACCAGAAGGAAGTAATGCTTAAATGGAGgtacattcat ... atacctacagGCACGCTTGATACTATTGTTTCCTGTAATGAGATGAGATCGTCATAGGTAG
EST: gi|192313508|gb|FK004132.1|FK004132
EST:     CAAAA-CAAGATTGATTACATTACCAGAAG-AAGTAATGCTTAAATGGAG                         -CACGCTTGATACTATTGTTTC-TGTA-TGAGATGAGATCGTC
genomic: CAAAAACAAGATTGATTACATTACCAGAAGGAAGTAATGCTTAAATGGAGgtacattcat ... atacctacagGCACGCTTGATACTATTGTTTCCTGTAATGAGATGAGATCGTC
EST: gi|22524713|gb|BU083524.1|BU083524
EST:     CAAAAACAAGATTGATTACATTACCAGAAGGAAGTAATGCTTAAATGGAG                         GCACGCTTGATACTATTGTTTCCTGTAATGAGATGAGATCGTCATAGGTAG
genomic: CAAAAACAAGATTGATTACATTACCAGAAGGAAGTAATGCTTAAATGGAGgtacattcat ... atacctacagGCACGCTTGATACTATTGTTTCCTGTAATGAGATGAGATCGTCATAGGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttctgcaaagacatcctaatctacatattatacatattcttatacctacagGCACGCTTGATACTATTGTTTCCTGTAATGAGATGAGATCGTCATAGGTAGAAGCTACTGAAATCATTGTTCTCTATGGGCCATGAAATCATTGTTCTCA
                 tcctaat  putative branch site (score: 2)
                                        ttcttat  putative PPT
                    taatctacatattata  TA-rich tract