1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatagtgaaattggagattatggcaactctaatcacattagtttcacgatatccaaatcaaatatggtttcagttaatactgctaatactaaccatgcctgtgtcctttatgagttgtaatattatacttgtttttattgcctgcagCTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGGCTGCTAGGATGTCAGTTGCTTGTGCTCAAAATCTTAGCAAGTTCACTAA
species | Glycine max |
transcript | GLYMA01G41600.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TATGGCTCGAGTGGAACAACTGATGCAATATCACTCTGATGTTAAAAAGG CTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGGEST: gi|308222719|gb|HO760629.1|HO760629
genomic: TATGGCTCGAGTGGAACAACTGATGCAATATCACTCTGATGTTAAAAAGGgtatagtgaa ... ttgcctgcagCTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGG
EST: TATGGCTCGAGTGGAACAACTGATGCAATATCACTCTGATGTTAAAAAGG CTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGGEST: gi|58018391|gb|CX705133.1|CX705133
genomic: TATGGCTCGAGTGGAACAACTGATGCAATATCACTCTGATGTTAAAAAGGgtatagtgaa ... ttgcctgcagCTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGG
EST: TATGGCTCGAGTGGAACAACTGATGCAATATCACTCTGATGTTAAAAAGG CTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGG
genomic: TATGGCTCGAGTGGAACAACTGATGCAATATCACTCTGATGTTAAAAAGGgtatagtgaa ... ttgcctgcagCTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGG
ccatgcctgtgtcctttatgagttgtaatattatacttgtttttattgcctgcagCTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGGCTGCTAGGATGTCAGTTGCTTGTGCTCAAAATCTTAGCAAGTTCACTAA
tttttatt CT-rich tract
agttgtaatattatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagtgaaattggagattatggcaactctaatcacattagtttcacgatatccaaatcaaatatggtttcagttaatactgctaatactaaccatgcctgtgtcctttatgagttgtaatattatacttgtttttattgcctgcagCTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGGCTGCTAGGATGTCAGTTGCTTGTGCTCAAAATCTTAGCAAGTTCACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG