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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagcttatttagtataggttatttcatgccatttcgtacttccccttatttgaagtattgttcctctatgatttttgttagagttatgggtttgtgcaatactttagtgataattcttttgtttgtgtagGTATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATACAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT

Basic information

species Glycine max
transcript GLYMA01G39800.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 7
--gtatagcttatttagtataggttatttcatgccatttcgtacttccccttatttgaagtattgttcctc-tatgatttttgttagagttatgggtttgtgcaatactttagtgataattcttttgtttgtgtagGTATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATACAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT
    |||| |    |    | | ||  ||  |  | |||  |   | || | |||||   |||| | |  | ||| |||||  ||      |      | || || |        || ||  | |  | |    ||| ||||| |||||||| || |||||  |||||||||||||| || | ||  |||| ||||||| ||| |||||||| ||||||| ||| || || ||| |
gtaaatagatatcattactttgtttgatttttctctttttatggctaccttcatttgt--tattatactgcatatcattttacttgccaacagattcatttgtaaca-------aatgatcttatactattatcagGAATTGTGGTTCGTAATACACTTGTTGTGTATGATCGTGAGAATTCGAAGGTTGGATTCTGGAGAACCAATTGTTCGGAGTTATCGGATAGGCTTCATAT

upper sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 7
gtatagcttatttagtatag-gttatttcatgccatttcgtacttccccttatttgaagtattg-----ttcctctatgatttttgttagagt--------tatgggtttgtgca-------atactttag-tgataattcttttgtttgtgtagGTATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATACAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT
   ||  |||| |   |  | ||  |  ||||||||      |||| | | || ||||  ||||     ||| | |||| ||| ||||  | |         ||  | |||| ||        | | |||| |||| | | |  | ||||   ||||||  |||| || || |||||||| |||||||||||||||||    || |||||||||||||||||||||||||||||| ||||||||| ||| ||  |
--gtattttatattacaccgagtcctcacatgccatc-----cttctcatcatgtgaaaaattggtcttttcttatatgttttatgttgaattaccaacttcatctgcttgtacatttattagtgcattaggtgattaatataatttttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttagagttatgggtttgtgcaatactttagtgataattcttttgtttgtgtagGTATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATACAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT
                                      ttcttttgttt  CT-rich tract
                                  ataattcttttgttt  TA-rich tract