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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagcttatttagtataggttatttcatgccatttcgtacttccccttatttgaagtattgttcctctatgatttttgttagagttatgggtttgtgcaatactttagtgataattcttttgtttgtgtagGTATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATACAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT

Basic information

species Glycine max
transcript GLYMA01G39800.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 7
--gtatagcttatttagtataggttatttcatgccatttcgtacttccccttatttgaagtattgttcctc-tatgatttttgttagagttatgggtttgtgcaatactttagtgataattcttttgtttgtgtagGTATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATACAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT
|||| | | | | || || | | ||| | | || | ||||| |||| | | | ||| ||||| || | | || || | || || | | | | ||| ||||| |||||||| || ||||| |||||||||||||| || | || |||| ||||||| ||| |||||||| ||||||| ||| || || ||| |
gtaaatagatatcattactttgtttgatttttctctttttatggctaccttcatttgt--tattatactgcatatcattttacttgccaacagattcatttgtaaca-------aatgatcttatactattatcagGAATTGTGGTTCGTAATACACTTGTTGTGTATGATCGTGAGAATTCGAAGGTTGGATTCTGGAGAACCAATTGTTCGGAGTTATCGGATAGGCTTCATAT

upper sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 7
gtatagcttatttagtatag-gttatttcatgccatttcgtacttccccttatttgaagtattg-----ttcctctatgatttttgttagagt--------tatgggtttgtgca-------atactttag-tgataattcttttgtttgtgtagGTATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATACAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT
|| |||| | | | || | |||||||| |||| | | || |||| |||| ||| | |||| ||| |||| | | || | |||| || | | |||| |||| | | | | |||| |||||| |||| || || |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||| || |
--gtattttatattacaccgagtcctcacatgccatc-----cttctcatcatgtgaaaaattggtcttttcttatatgttttatgttgaattaccaacttcatctgcttgtacatttattagtgcattaggtgattaatataatttttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttagagttatgggtttgtgcaatactttagtgataattcttttgtttgtgtagGTATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATACAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT
                                      ttcttttgttt  CT-rich tract
 ataattcttttgttt  TA-rich tract