1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttgcaaatgggggaaagtgaaatattattgtccctcaaggtcattgttacacctgctgttgaatgtttctgatgattcataatttttgtctggttaacagGTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTGGCTAGAGATGTTTGAGGATGTTGAAATGGTCATCTTCTGTGTTTCCTTG
species | Glycine max |
transcript | GLYMA01G38890.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAG GTATCAACTAATTAGGGTGCATGCAAGGGGGCTTGGAGAAAATTGCAAGTGEST: gi|192299613|gb|FG989995.1|FG989995
genomic: GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAGgtacgtgaaa ... tggttaacagGTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTG
EST: TTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAG GTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTGEST: gi|22934032|gb|BU551171.1|BU551171
genomic: GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAGgtacgtgaaa ... tggttaacagGTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTG
EST: GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAG GTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTG
genomic: GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAGgtacgtgaaa ... tggttaacagGTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTG
gttacacctgctgttgaatgtttctgatgattcataatttttgtctggttaacagGTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTGGCTAGAGATGTTTGAGGATGTTGAAATGGTCATCTTCTGTGTTTCCTTG
ttctgat putative branch site (score: 3)
tttttgtct putative PPT
atgattcataattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcaaatgggggaaagtgaaatattattgtccctcaaggtcattgttacacctgctgttgaatgtttctgatgattcataatttttgtctggttaacagGTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTGGCTAGAGATGTTTGAGGATGTTGAAATGGTCATCTTCTGTGTTTCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - gggggaa
- - - - - - - - - - - - - - - tccctca
- - - - - - - - - - - - - - - - - - - - - - - - -cacctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttctg