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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacattgagagaatagtagtataaagtcattaattaaagaatgaaactcttaaccatatttgcttggttcatgcagGCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAGAATACAATACTAAAGTGCCGGATGTCTCGCCCGGGACAG

Basic information

species Glycine max
transcript GLYMA01G38680.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38680.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 3'ss of exon 10
gtaaacattgagagaatagtag-tataaagtcattaattaaagaatgaaactcttaaccatatttgcttggttcatgcagGCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAGAATACAATACTAAAGTGCCGGATGTCTCGCCCGGGACAG-------------
|||||    |     ||  ||  | | || | |  || |   | ||| |  |  |   |  ||   ||||  |  | |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| | || ||    || || || ||||| || ||||||             
gtaaaaggagccctcatgatatcttttaattgaggaaattctgtatggattttattttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGGTTGGATCCCATG

upper sequence: GLYMA01G38680.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 7
gtaaacattgagagaatagtag-tataaagtcattaattaaagaatgaaactcttaaccatatttgcttggttcatgcagGCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAGAATACAATACTAAAGTGCCGGATGTCTCGCCCGGGACAG
|||||    |     ||  ||  | | || | |  || |   | ||| |  |  |   |  ||   ||||  |  | |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| | || ||    || || || ||||| || ||||||
gtaaaaggagcccccatgatatcttttaattgaggaaattctgtatggattttattttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagtcattaattaaagaatgaaactcttaaccatatttgcttggttcatgcagGCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAGAATACAATACTAAAGTGCCGGATGTCTCGCCCGGGACAG
                          tcttaac  putative branch site (score: 2)
       attaattaaagaatga  TA-rich tract