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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtctagtttttaactgttttcagcatagacatatagtgaattatgttgttttcatgtttttgcattcatgatctctatattgacaactggtggtgtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA

Basic information

species Glycine max
transcript GLYMA01G38410.4
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38410.3 (Glycine max), 3'ss of exon 10
lower sequence: AT4G36760.1 (Arabidopsis thaliana), 3'ss of exon 9
gtctgtctagtttttaactgttttcagcatagacatatagtgaattatgttgttttcatgtttttgcattcatgatctctatattgacaactggtggtgtctctg--aagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA
       ||  | | |  || ||  ||  || ||    ||   |   |||  || |||   | ||   |  || ||  | || | |     | || || | ||||  |||||||| ||||||||||| ||||| || ||||| ||||| ||||| ||||||||  |||| ||||| |  || ||||| || 
------gtaaatatcacatgattg-agtgtatactataagcttaccttgtatttatcaaagtctttgctctataata-caatttcgttg--ttgttgtctttctgcaaagTATCTCGATGGAACAACTGATATAACCCGAACGGTTCACTTTGGAAAACCTTCAGCTCATGAAAAGGAATGCTATACTGCG

upper sequence: GLYMA01G38410.3 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 10
-----------------gtctgtctagtttttaactgttt-tcagcatagaca-tatagtgaattatgttgttttcatgtttttgcattcatgatctctatattgacaactggtg-----gtgtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA
                    ||| | |  | || |  ||   ||    || || || | | | |    || || |  |   ||||  || ||||| |   ||||    |||| ||     |||||| ||||||||| |||||||||||| ||||| || ||||| ||||||||||| ||||||||  | || || ||||| || ||||| || 
gtttgccaactatcttgaattgtttgggatatagccattaaccaaagaaggcaatacaataagtccattttttgtattaactttgtgtttatgatattgctattctttactgatgatatggtgtctttgaagTATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCTTCATCACATGAGAAAGCATGCTATACTGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193667628|gb|FK609810.1|FK609810
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193474494|gb|FK439231.1|FK439231
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGNTTCTGGAGCCCAG                         TATCTAGATGGAACA
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACA
EST: gi|208095753|gb|GD894541.1|GD894541
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGGACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208059830|gb|GD857832.1|GD857832
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208049790|gb|GD844997.1|GD844997
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATA
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATA
EST: gi|208067928|gb|GD861438.1|GD861438
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208323699|gb|GE122270.1|GE122270
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193529169|gb|FK484360.1|FK484360
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193607102|gb|FK557407.1|FK557407
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208077550|gb|GD878231.1|GD878231
EST:     ACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: ACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208144459|gb|GD941650.1|GD941650
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193609533|gb|FK564831.1|FK564831
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|11274775|gb|BF325110.1|BF325110
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193603944|gb|FK559763.1|FK559763
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAA
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAA
EST: gi|254345308|gb|GR851577.1|GR851577
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|13480236|gb|BG509579.1|BG509579
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193518603|gb|FK476160.1|FK476160
EST:     TGCTGAACTTGATCCAGACAAAATTTATCTTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: TGCTGAACTTGATCCAGACAAAATTTATC-TTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193584966|gb|FK539387.1|FK539387
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208313226|gb|GE110924.1|GE110924
EST:     TTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: TTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208333048|gb|GE128151.1|GE128151
EST:     GCTGAACTTGATCCAGACAAAAATTTATCTTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GCTGAACTTGATCCAGAC-AAAATTTATC-TTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193710114|gb|FK643386.1|FK643386
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193360970|gb|FK323850.1|FK323850
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208080090|gb|GD878462.1|GD878462
EST:     ATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: ATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208159304|gb|GD953835.1|GD953835
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|298167280|gb|HO010719.1|HO010719
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193561153|gb|FK520218.1|FK520218
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAAC
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAAC
EST: gi|208140246|gb|GD936940.1|GD936940
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208333932|gb|GE129959.1|GE129959
EST:     ACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: ACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193419440|gb|FK383580.1|FK383580
EST:     AAAATTTATCTTTTTGATTTCTTGGTAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACC
genomic: AAAATTTATCTTTTTGA-TTC-TGG-AGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACC
EST: gi|208038996|gb|GD834616.1|GD834616
EST:     TTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: TTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|207801801|gb|GD772989.1|GD772989
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|23057556|gb|BU578230.1|BU578230
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193665284|gb|FK613876.1|FK613876
EST:     TTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: TTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208280146|gb|GE075444.1|GE075444
EST:     CAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: CAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193563514|gb|FK519961.1|FK519961
EST:     ATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: ATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193661816|gb|FK602658.1|FK602658
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|308222672|gb|HO760582.1|HO760582
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|308222671|gb|HO760581.1|HO760581
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193415192|gb|FK375756.1|FK375756
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|207801754|gb|GD772970.1|GD772970
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAG
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAG
EST: gi|208283994|gb|GE087720.1|GE087720
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAAACAAGAATAATTACACGAACAG
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAA-CA-GA-TA-TTACACGAACAG
EST: gi|193597274|gb|FK554490.1|FK554490
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193609346|gb|FK562966.1|FK562966
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193541183|gb|FK498739.1|FK498739
EST:     GTGCTGAACTTGATCCAGACAAAATTTATC-TTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208093235|gb|GD891882.1|GD891882
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208200295|gb|GE001307.1|GE001307
EST:     AACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTCCATTTTGGTAAACCT
genomic: AACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193363719|gb|FK330897.1|FK330897
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193631112|gb|FK579555.1|FK579555
EST:     ATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: ATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|254337587|gb|GR849433.1|GR849433
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|207726087|gb|GD702789.1|GD702789
EST:     GTGCTGAACTTGATCCAGAC-AAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193471084|gb|FK436983.1|FK436983
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TGTCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|15001132|gb|BI321946.1|BI321946
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         CATCTAGATGGAACAACAGATATTACACGAACAGGTCATTTTGGGAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|207717045|gb|GD699569.1|GD699569
EST:     GTGCTGAACTTGATCCAGATAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAGCAACAGATATTACACGAACAGT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGT
EST: gi|193717484|gb|FK651650.1|FK651650
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|207717247|gb|GD697224.1|GD697224
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193562556|gb|FK517771.1|FK517771
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAA
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAA
EST: gi|13482091|gb|BG511434.1|BG511434
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAT                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208117239|gb|GD918153.1|GD918153
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|298186383|gb|HO037016.1|HO037016
EST:     GTGCTGAACTTGATCCAGACAAAACTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193628128|gb|FK576742.1|FK576742
EST:     CAAAA-TTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: CAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208209477|gb|GE008213.1|GE008213
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208067910|gb|GD861420.1|GD861420
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208278272|gb|GE075727.1|GE075727
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|207791863|gb|GD765002.1|GD765002
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTC
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTC
EST: gi|207808551|gb|GD779446.1|GD779446
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208070001|gb|GD868774.1|GD868774
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|5753558|gb|AI960845.1|AI960845
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|7588809|gb|AW704596.1|AW704596
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208316856|gb|GE111395.1|GE111395
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193532042|gb|FK489244.1|FK489244
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193542228|gb|FK494030.1|FK494030
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATAATTAACAACGAACAGTTCATTT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATA-TTA-CA-CGAACAGTTCATTT
EST: gi|9902696|gb|BE611664.1|BE611664
EST:     GTGCTGAACTTGATCCACACAAAATTGATCTGTATGATTCTGGAACCCAG                         TATCTAGATGGAACGACAGATATTACACGAACAGTTCATTGTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|15286677|gb|BI470568.1|BI470568
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|193601653|gb|FK549488.1|FK549488
EST:     CTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: CTTTTTGATTCTGGAGCCCAGgtctgtctag ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatgtttttgcattcatgatctctatattgacaactggtggtgtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCA
                            tattgac  putative branch site (score: 2)
                                            tgtctct  putative PPT
                        tctatatt  TA-rich tract