Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgcttatttcaaagtttctttataaaatttagctcctttaaaattgtggaatatgaaatatttttaatctatgaatttcagGCCTGTTACCCTTGTAGGTTACTCACTTGGGGCTAGAGTTATTTTCAAGTGTCTGGAGTTTTTGGCTGAAACAGAAAACAGTG

Basic information

species Glycine max
transcript GLYMA01G37420.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37420.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 10
------------------------gtattttgcttatttcaaagtttct--ttataaaatttagctcctttaaaattgtggaatatgaaatatttttaatctatgaatttcagGCCTGTTACCCTTGTAGGTTACTCACTTGGGGCTAGAGTTATTTTCAAGTGTCTGGAGTTTTTGGCTGAAACAGAAAACAGTG
                          || | | ||||| ||   ||  |  || ||| | ||   |   ||||   |    | | |    |    ||    |     |||||||||||| || || ||||||||||| ||||| ||  |||| ||||||||||||||| ||| |||||||||||| ||| | | ||
gtaaatgggtggtatcaaagttaatgatgtggtttattccattcttattagttctaagagttgaatgacttaa---ttaaaattctctcttgggctttccttggatttttcagGCCTGTGACACTCGTAGGTTACTCTCTTGGAGCACGAGTGATTTTCAAGTGTCTGCAGTATTTGGCTGAAACTGAACAAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15201810|gb|BI425071.1|BI425071
EST:     GCAGGAAAGTTGCTTGCTGAAGTATTATTGGGAGGGTTGCAGGGAAATAG                         GCCTGTTACCCTTGTAGGTTACTCACTTGGGGCTAGAGTTATTTTCAAGTG
genomic: GCAGGAAAGTTGCTTGCTGAAGTATTATTGGGAGGGTTGCAGGGAAATAGgtattttgct ... tgaatttcagGCCTGTTACCCTTGTAGGTTACTCACTTGGGGCTAGAGTTATTTTCAAGTG
EST: gi|15202089|gb|BI425216.1|BI425216
EST:     GCAGGAAAGTTGCTTGCTGAAGTATTATTGGGAGGGTTGCAGGGAAATAG                         GCCTGTTACCCTTGTAGGTTACTCACTTGGGGCTAGAGTTATTTTCAAGTG
genomic: GCAGGAAAGTTGCTTGCTGAAGTATTATTGGGAGGGTTGCAGGGAAATAGgtattttgct ... tgaatttcagGCCTGTTACCCTTGTAGGTTACTCACTTGGGGCTAGAGTTATTTTCAAGTG
EST: gi|12773115|gb|BG238042.1|BG238042
EST:     GCAGGAAAGTTGCTTGCTGAAGTATTATTGGGAGGGTTGCAGGGAAATAG                         GCCTGTTACCCTTGTAGGTTACTCACTTGGGGCTAGAGTTATTTTCAAGTG
genomic: GCAGGAAAGTTGCTTGCTGAAGTATTATTGGGAGGGTTGCAGGGAAATAGgtattttgct ... tgaatttcagGCCTGTTACCCTTGTAGGTTACTCACTTGGGGCTAGAGTTATTTTCAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttagctcctttaaaattgtggaatatgaaatatttttaatctatgaatttcagGCCTGTTACCCTTGTAGGTTACTCACTTGGGGCTAGAGTTATTTTCAAGTGTCTGGAGTTTTTGGCTGAAACAGAAAACAGTG
                                   ttttaat  putative branch site (score: 3)
          tttaaaattgtggaat  TA-rich tract