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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaacttacatcatgcttttgtttctatacatagtgacacaactgataatagaaactcctacatgtctgttttattttcagACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATT

Basic information

species Glycine max
transcript GLYMA01G37380.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37380.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os06g49990.3 (Oryza sativa), 3'ss of exon 10
-------------------------gtttgtaacttacatcatgcttttgtttctatacatagtgacacaactgataatagaaactcctacatgtctgttttattttcagACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATT
                         || || |  | | |       ||| ||||      |    |  |   || |||         |||||| | | || |  || ||||| ||||  || ||||||||||| |||||||| ||||||||||||||| | ||||||||||| || || |||||||||||||||||| |||   | ||  
gtatttatattcttacactaaggatgtctgcagttcaaagggcatgtttttttcagagactcaaaatgc--ttgctaaccttg--ctctacatttattttctccttgcagACACACAGGATAAAGAAGTTTGTTTTACACACAAACTTCCCTGGTCATTCAGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAG

upper sequence: GLYMA01G37380.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 10
gtttgtaacttacatcatgcttttgtttctatacatagtgacacaactgataatagaaactcctacatgtctgttttattttcagACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATT
||  | |||| |     |    || | | | | |||    ||        || |   |||         |||   || | | |||||||||||| | || ||||||||  | ||||||||||  || ||||||||||||||||| || ||||| ||||| |||||||| ||    |         
gtaggaaactcatcaactagagttatatgt-tccattcgtacgttttctttattcacaac---------tctaccttttctgcagACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCTGATTTCAACTCATACATAAAGTGCAACTTTGTGATTTCGG---------

upper sequence: GLYMA01G37380.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 3'ss of exon 10
---------------gtttgt-aacttacatcatgcttttgtttctatacatagtgacacaactgataatagaaactcctacatgtctgtttt--attttcagACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATT
               || ||| ||  || ||  | |||   |     |    |   | |  |  |    |  ||  ||  | ||   ||| ||  |||| |||||||| ||||||||||| ||||| || ||||| ||||  ||||| ||||| ||||| ||||| ||||| || || |||||||||||| |||| || ||||
gtactcctttttattgtgtgtcaaaatatatattacttcaataatattgtgcatatatatcatcgtacttgaaagttctcagattattgtattggatttgcagACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCAGATTTTAATTCATACATGAAATGCAACTTTGTTATCTATGGTTCTGATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15661878|gb|BI699249.1|BI699249
EST:     CTTTTATAATTATTTTACTCGTGGTCTGGACATCTTAATTTGATGGACAG                         ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGT
genomic: CTTTTATAATTATTTTACTCGTGGTCTGGACATCTTA-TTTGATGGACAGgtttgtaact ... ttattttcagACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacatagtgacacaactgataatagaaactcctacatgtctgttttattttcagACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATT
              aactgat  putative branch site (score: 3)
                                       tctgttttattttc  putative PPT
                                         tgttttatttt  TA-rich tract