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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatctactgttttctttttcacctttgcaatttgttagtagtagtagataataaacttattttgatataactatatattcaaacattcgctttctgcagGCACAATCGCGCAATTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCATGCTATGGACATATGCTTTGGCCTCAGTTGCAGTCACTTTTTGGACAAC

Basic information

species Glycine max
transcript GLYMA01G36030.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36030.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0044g01880.t01 (Vitis vinifera), 3'ss of exon 11
----gtatctactgttttctttttcacct-ttgcaatttgttagtagtagtagataataaacttattttgatataactatatattcaaacattcgctttctgcagGCACAATCGCGCAATTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCATGCTATGGACATATGCTTTGGCCTCAGTTGCAGTCACTTTTTGGACAAC
    | |  |||   |      |    || ||  ||||||   ||  |  |||| || |   ||| || ||   |  | | ||       ||  |      |||||||||||| ||||  |||||||||| || ||  | ||||||||||| |||||||| ||||||||||| ||||| ||||||||  ||||  ||||| | ||
gtatggaaatacacctgaaacataattctattataatttg--ggtgttgataga-aaaaggattaattagaggcagttgtgta-------atgtg------gcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCATGCTGTGGACATATGCCTTGGCGTCAGTTGCCCTCACGCTTTGGTCCAC

upper sequence: GLYMA01G36030.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0044g01870.t01 (Vitis vinifera), 3'ss of exon 9
----gtatctactgttttctttttcacctttgcaatttgttagtagtagtagataataaacttattttgatataactatatattcaaacattcgctttctgcagGCACAATCGCGCAATTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCATGCTATGGACATATGCTTTGGCCTCAGTTGCAGTCACTTTTTGGACAAC
     ||  | |  |  | |     |   ||| | || |||  | | | || ||  |   |||  ||| |||| |  || |     |||   |   |  ||||||||||||    || ||||||||||| |||||  |||||||||||||||||||||| ||||||||||  ||||| |||||| || ||||  ||||| ||||
tttgataatttcactggtttaagaaagagttgaagttcgttccttggattatat--ttgcctt--tttaatatgaaaatttgactcaactccctaatcttgcagGCACAATTATCCAGTTGTTTGGAGCGGGTGAGAGTGAATGTTCTGTTATCATGCTGTGGACATATGGCTTGGCATCAGTTTCACTCACCCTTTGGTCAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193533194|gb|FK488940.1|FK488940
EST:     TCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCAGCAATGGCTATAG                         GCACAATCGCGCAATTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTAATC
genomic: TCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCAGCAATGGCTATAGgtataatatc ... ctttctgcagGCACAATCGCGCAATTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTA-TC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagataataaacttattttgatataactatatattcaaacattcgctttctgcagGCACAATCGCGCAATTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCATGCTATGGACATATGCTTTGGCCTCAGTTGCAGTCACTTTTTGGACAAC
                    atataac  putative branch site (score: 3)
                                         ttcgctttct  putative PPT
     aataaacttattttga  TA-rich tract