1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cctatcttttcttcgtctctgcctctcccctgtttacataataaaaaaacattttctgtcactgtcttatgctcagctacagaaatgtactctattacagGTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATAGATATTAGAGAGTACTCAATACTTGATAATCCCATCCTCCCCTCAGAG
species | Glycine max |
transcript | GLYMA01G35690.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTCTTTGAG GTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATAEST: gi|57574398|gb|CX547373.1|CX547373
genomic: GGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTCTTTGAGgtatttctag ... tctattacagGTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATA
EST: GTCTATGACTAGACAACCTTTTCTCTGTCC-TTGGATCCATGTCTTTGAG GTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATA
genomic: GTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGAT-CATGTCTTTGAGgtatttctag ... tctattacagGTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATA
aaaacattttctgtcactgtcttatgctcagctacagaaatgtactctattacagGTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATAGATATTAGAGAGTACTCAATACTTGATAATCCCATCCTCCCCTCAGAG
ctctatt CT-rich tract
attttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctatcttttcttcgtctctgcctctcccctgtttacataataaaaaaacattttctgtcactgtcttatgctcagctacagaaatgtactctattacagGTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATAGATATTAGAGAGTACTCAATACTTGATAATCCCATCCTCCCCTCAGAG
- - - - - - - -tctctgc
- - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtac