1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagtcgtttttgtatattgcttagctgtgaaacactgatcaataaattgtgtgtaatccttgttttttttcctgttttcttcgctttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTTCAACATCCTTTCTTCCAG
species | Glycine max |
transcript | GLYMA01G35190.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGGCTTATTACA TCACTTTGCTCCTGAGATCCCTGCAAGAGGCCAACAGCTTCAGAGGCACTAEST: gi|19938441|gb|BQ081721.1|BQ081721
genomic: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACAgtaagtcgtt ... tttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTT
EST: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACA TCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTTEST: gi|26059828|gb|CA802742.1|CA802742
genomic: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACAgtaagtcgtt ... tttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTT
EST: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACA TCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTTEST: gi|11274199|gb|BF324567.1|BF324567
genomic: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACAgtaagtcgtt ... tttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTT
EST: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACA TCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTTEST: gi|192299757|gb|FG990052.1|FG990052
genomic: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACAgtaagtcgtt ... tttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTT
EST: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACA TCACTTTGCTCCTGGGATCCCTGCA-GAGGC-AACGGCTTCEST: gi|298163466|gb|HO012199.1|HO012199
genomic: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACAgtaagtcgtt ... tttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTC
EST: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACA TCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTTEST: gi|298178671|gb|HO024406.1|HO024406
genomic: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACAgtaagtcgtt ... tttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTT
EST: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACA TCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTT
genomic: TTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACAgtaagtcgtt ... tttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTT
caataaattgtgtgtaatccttgttttttttcctgttttcttcgctttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTTCAACATCCTTTCTTCCAG
ctttaat putative branch site (score: 4)
taatccttgttttttt CT-rich tract
ttgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcgtttttgtatattgcttagctgtgaaacactgatcaataaattgtgtgtaatccttgttttttttcctgttttcttcgctttaatgtagTCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTTCAACATCCTTTCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG