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gtaatttatcttaactcatctgttgaactggcatttactgttgtcattttatattaactaacaattctagtaaaagttgtttttcttgatgagtctggtaatttgttaaaactgaaagaggagaccattgtgcagGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATA
species | Glycine max |
transcript | GLYMA01G32810.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACCAAAAGCATGTGCTGAA GCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAEST: gi|192316760|gb|FK006463.1|FK006463
genomic: ACCAAAAGCATGTGCTGAAgtaatttatc ... cattgtgcagGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAA
EST: GTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAA GCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAEST: gi|192316761|gb|FK006464.1|FK006464
genomic: GTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAgtaatttatc ... cattgtgcagGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAA
EST: GTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAA GCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAEST: gi|192312071|gb|FK005612.1|FK005612
genomic: GTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAgtaatttatc ... cattgtgcagGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAA
EST: GTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAA GCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAA
genomic: GTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAgtaatttatc ... cattgtgcagGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAA
ttttcttgatgagtctggtaatttgttaaaactgaaagaggagaccattgtgcagGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATA
tcttgat putative branch site (score: 4)
taatttgttaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttatcttaactcatctgttgaactggcatttactgttgtcattttatattaactaacaattctagtaaaagttgtttttcttgatgagtctggtaatttgttaaaactgaaagaggagaccattgtgcagGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATA
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