1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cacctgctactgtatttttggaactcgtgtggtatttgcttagtcttttgaaatgtttctcaaattttctctcctgttttcttttgtgtgtgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAAATTCAG
species | Glycine max |
transcript | GLYMA01G25940.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|31560932|gb|CD486770.1|CD486770
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: CTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|213592922|gb|DB966027.1|DB966027
genomic: CTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: TGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|192309681|gb|FG999894.1|FG999894
genomic: TGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|31305572|gb|CD390775.1|CD390775
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: CTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|58014614|gb|CX701356.1|CX701356
genomic: CTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|192325446|gb|FK018387.1|FK018387
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|120494647|gb|EH222814.1|EH222814
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTT-GAGGGACAGATCTCAGGAAAAAAEST: gi|57575724|gb|CX548699.1|CX548699
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAA
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|31472270|gb|CD414298.1|CD414298
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: CTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|8403449|gb|BE059083.1|BE059083
genomic: CTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTNTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|4313519|gb|AI460638.1|AI460638
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: TGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTTGAAGGATGG -TTTGAGGGACAGATCTCAGEST: gi|192316847|gb|FK010834.1|FK010834
genomic: TGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTT-GAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAG
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATTTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|151406778|gb|EV276593.1|EV276593
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAG-AAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|19348090|gb|BM892622.1|BM892622
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCEST: gi|192326825|gb|FK018922.1|FK018922
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
EST: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGEST: gi|193720646|gb|FK662002.1|FK662002
genomic: ATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGG
EST: GCAGTCCACACATCAATATTGACTTTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
genomic: GCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcat ... tgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGC
ttttgaaatgtttctcaaattttctctcctgttttcttttgtgtgtgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAAATTCAG
ttttctctcctgtttt CT-rich tract
tcaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacctgctactgtatttttggaactcgtgtggtatttgcttagtcttttgaaatgtttctcaaattttctctcctgttttcttttgtgtgtgtttcacagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
cacctgc
- - - - - - - - - - - - tcgtgtg
- - - - - - - - - - - - - - - - - - tgcttag