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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaaaattaatatttttttgttagattgtttcttttcaaagaaatattagttttatttgttgatctgcctcttctgaagaagaaatatccatttttccgtacttattttcccttttcaacctcctatttgcaccaggtgaagagGCAAAAAATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTG

Basic information

species Glycine max
transcript GLYMA01G20810.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatgaaaaattaatatttttttgttagattgtttcttttcaaagaaatattagttttatttgttgatctgcctcttctgaagaagaaatatccatttttccgtacttattttcccttttcaacctcctatttgcaccaggtgaagagGCAAAAAATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTG
                                                              ||   ||   || |||    |        | | |  |||  ||  | || |  || ||    ||   ||| |  |  |   | ||||  ||||||   || ||| ||||||| ||||||||||| |||||||| || ||||| ||||||||||| |||||||| |||||||||||           
--------------------------------------------------------------gtcagtcacacttttcattggttttctcctacttaattcaatagct-ttctaactgttgggtctttgatt-gtccagGTCAATGAGGGGAAAAATGTCTTAAAGCTTTGTGATTTTGGTAATGCAATGTTTGCAGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACA---------

upper sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G13350.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatgaaaaattaatatttttttgttagattgtttcttttcaaagaaatattagttttatttgttgatctgcctcttctgaagaagaaatatccatttttccgtacttattttcccttttcaacctcctatttgcaccaggtgaa-gagGCAAAAAATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTG
                                                  | || | || ||||   | |   ||| |||    |   | ||  |||||     |||| |  ||  |  |  |     |||     ||||||||| |||| || ||| || || ||| ||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||| |||||||| ||           
-------------------------------------------------gtaagctatacttgtctgtgtttttctcctgcttgatgcacataaatttta----acttctggtcgttccttgat----tat-----ccagGTGAATGAGGGAAGAAACACGTTAAAGCTTTGTGACTTTGGTAGTGCAATGTTTGCTGGTACAAACGAAGTTACACCATATCTTGTTAGTCGCTTCTACA---------

upper sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 8
gtatgaaaaattaatatttttttgttagattgtttcttttcaaagaaatattagttttatttgttgatctgcctcttctgaagaagaaatatccatttttccgtacttattttcccttttcaacctcctatttgcaccaggtgaa-gagGCAAAAAATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTG
                               ||   |||| |    | | |||  |  | |||     ||   | || |  |   |  |||   | ||||  | | | | |||  || |  |      |   |    ||||| || ||||| ||||||    | ||  | ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||         
-------------------------------gtaggttttaagtatacttttatgtccagttgcctgccttagtttttt--atttgttataataaatttt--gcattgaattttactatata-ttcattgcctctttcagGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC---------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttttccgtacttattttcccttttcaacctcctatttgcaccaggtgaagagGCAAAAAATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTG
          tacttatttt  TA-rich tract