Sequence
atgc intronic sequence ATGC exonic sequencegtgagtaaaaaattaatcattgcttaatattttacttctaacttttgtcctctatcaatgtaatgatctagattttttattttttttagtttatacaatttggtcttgcttgtatgattaaacttatatttggtatgaaaaactcaatttctctcttccatacagTGGTGCCTTAATTGGACATCCAGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCT
Basic information
species | Glycine max |
transcript | GLYMA01G14800.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G14800.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G45332.1 (Arabidopsis thaliana), 3'ss of exon 15
gtgagtaaaaaattaatcattgcttaatattttacttctaacttttgtcctctatcaatgtaatgatctagattttttattttttttagtttatacaatttggtcttg-cttgtatgattaaacttatatttggtatgaaaaactcaatttctctcttccat-acagTGGTGCCTTAATTGGACATCCAGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCT
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-------------------------------------------------------------------gtgagtgatcttcgtctctcaatttct-cgttttcctcttgatttatttgaggaaatgt---tgttgtaagtgacagtgaaaccccctattccattgcagGGGCTCACTAATTGGTCACCCTGTAGAAAATCTCAGAATAGTATTGACAGATGGAGCTTCACACGCTGTAGATTCCAGTGAACTTGCGTTTAAAATGGCT
upper sequence: GLYMA01G14800.1 (Glycine max), 3'ss of exon 10
lower sequence: AT2G45030.1 (Arabidopsis thaliana), 3'ss of exon 15
gtgagtaaaaaattaatcattgcttaatattttacttctaacttttgtcctctatcaatgtaatgatctagattttttattttttttagtttatacaatttggtcttgcttgtatgattaaacttatatt-tggtatgaaaaactcaatttctctcttccat-acagTGGTGCCTTAATTGGACATCCAGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCT
| | | | | | ||| ||| | ||| | | ||| ||| ||| ||||| || || || | || || | ||| | | | | || | || |||||| ||| || | ||||||| || || || || |||||| || | || ||||||||||| ||| | || || || ||||||||||||||||||||||| |||||
-------------------------------------------------gtgagtgatcttggtctctcaaattctttgtctttctcaatttctacttttttctcttgttt---tggttgaggaaatgttgttgtaagtgatagtgaaacgccctattccattgcagGGGCTCACTAATTGGTCACCCTGTAGAGAATCTTAGAATAGTATTGACAGATGGAGCTTCACACGCGGTAGATTCCAGTGAACTTGCGTTTAAAATGGCT
upper sequence: GLYMA01G14800.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 15
gtgagtaaaaaattaatcattgcttaatattttacttctaacttttgtcctctatcaatgtaat--gatctagattttttattttttttagtttatacaatttggtcttgcttgtatgattaaacttatatttggtatgaaaaactcaatttctctcttccatacagTGGTGCCTTAATTGGACATCCAGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCT
|| | || | |||| ||| | |||| || | | | || || | | | | ||| ||| | ||||||| | || | | | || || | | | | ||| || || | | ||||||| ||||| ||| | | || || ||||||||||||||| |||| | || || ||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |||
----gtgagtggtttaccatttctttttctttt-tttttttcatctgatcttttttattataaatggattgatattttttctgattctatgcatgaacttttggtaactatcaaagaagtgtgaactattgttattagtattgatctgatttctcgtacttgtacagGGGTTCACTGATAGGGCATCCAGTTGAAAATATTCGTATCGTTTTAACAGACGGTGCTGCCCATGCTGTGGATTCTAGTGAACTTGCATTTAAGTTAGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtatgattaaacttatatttggtatgaaaaactcaatttctctcttccatacagTGGTGCCTTAATTGGACATCCAGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCT
ctcaatttctctcttc CT-rich tract
attaaacttatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtaaaaaattaatcattgcttaatattttacttctaacttttgtcctctatcaatgtaatgatctagattttttattttttttagtttatacaatttggtcttgcttgtatgattaaacttatatttggtatgaaaaactcaatttctctcttccatacagTGGTGCCTTAATTGGACATCCAGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT