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gtaattaacctatatctctgctttgtttttggtcttaatatcaatttagagatttagcattcatgcttacatgatcagactgtccttgtctgaagtgtccaaatatagctcttatgatatgcatgctaaccttgcacctgataccattggtattttgtatgtattataacctccttttttctttccagTGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAGGCATAGCCAACTTTACTGATGTTGCTGCCACATTTAGTGGTATAATTC
species | Glycine max |
transcript | GLYMA01G03530.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTACGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|10844996|gb|BF068185.1|BF068185
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTACGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTACGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|15813176|gb|BI785451.1|BI785451
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTACGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GAAGAGGAGGTCTTGCAGTACGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|13787913|gb|BG650505.1|BG650505
genomic: GAAGAGGAGGTCTTGCAGTACGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GGTCTTGCAGTACGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGA
genomic: GGTCTTGCAGTACGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGA
gcacctgataccattggtattttgtatgtattataacctccttttttctttccagTGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAGGCATAGCCAACTTTACTGATGTTGCTGCCACATTTAGTGGTATAATTC
ttataac putative branch site (score: 2)
ttataacctccttttt CT-rich tract
tattttgtatgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaacctatatctctgctttgtttttggtcttaatatcaatttagagatttagcattcatgcttacatgatcagactgtccttgtctgaagtgtccaaatatagctcttatgatatgcatgctaaccttgcacctgataccattggtattttgtatgtattataacctccttttttctttccagTGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAGGCATAGCCAACTTTACTGATGTTGCTGCCACATTTAGTGGTATAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC