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...tgataaaatatcaactgatataatacgttactcactagaattagcctaatttgtgcacttatctataaattcattatggtttacactatctttttctcagGTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACTAAGCAAGATGAGGGTCTGGTTGCTGGTATTAGAGGGATAGAGTGGGATG
species | Glycine max |
transcript | GLYMA01G02480.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCAAACTCCTCCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAG GTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACTEST: gi|58021287|gb|CX708029.1|CX708029
genomic: ATCAAACTCCTCCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAGgtaacctcaa ... tttttctcagGTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACT
EST: TTCAAACTCTTCCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAG GTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACTEST: gi|58018001|gb|CX704743.1|CX704743
genomic: ATCAAACTCCTCCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAGgtaacctcaa ... tttttctcagGTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACT
EST: TCAAACT-CTCCCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAG GTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACTEST: gi|16284148|gb|BI945931.1|BI945931
genomic: TCAAACTCCT-CCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAGgtaacctcaa ... tttttctcagGTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACT
EST: ACATTCCGTGAG GTTAAGACTGTTTCCCATGAATTTGGTCATGCTCTTCAACATATGCTTACTEST: gi|58022383|gb|CX709124.1|CX709124
genomic: ACATTCCGTGAGgtaacctcaa ... tttttctcagGTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACT
EST: CCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAG GTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACT
genomic: CCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAGgtaacctcaa ... tttttctcagGTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACT
ctaatttgtgcacttatctataaattcattatggtttacactatctttttctcagGTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACTAAGCAAGATGAGGGTCTGGTTGCTGGTATTAGAGGGATAGAGTGGGATG
gcctaat putative branch site (score: 3)
cactatctttttctc putative PPT
acttatctataaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgataaaatatcaactgatataatacgttactcactagaattagcctaatttgtgcacttatctataaattcattatggtttacactatctttttctcagGTTGAGACTGTTTTCCATGAATTTGGTCATGCTCTTCAACATATGCTTACTAAGCAAGATGAGGGTCTGGTTGCTGGTATTAGAGGGATAGAGTGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- ataaaata
- - - - - -caactga
- - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc