1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atcatttaagtgatagaaattagactgtaaaaatatgctctatatttttatttgccaattttttcacaactggtttatgaatatcattttgacctcccagGATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAG
species | Glycine max |
transcript | GLYMA01G00870.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAACAAGCTTTTTCAAGATGTTGGCCTATGGATATCCCAAAAGATTAGG GATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAGEST: gi|192321852|gb|FK013230.1|FK013230
genomic: GAAACAAGCTTTTTCAAGATGTTGGCCTATGGATATCCCAAAAGATTAGGgtcggattgt ... gacctcccagGATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAG
EST: GAAACAAGCTTTTTCAAGATGTTGGCCTATGGATATCCCAAAAGATTAGG GATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAGEST: gi|6725492|gb|AW309891.1|AW309891
genomic: GAAACAAGCTTTTTCAAGATGTTGGCCTATGGATATCCCAAAAGATTAGGgtcggattgt ... gacctcccagGATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAG
EST: CAAAGGATTAGG GATCATTTTGCTGCACAGAAGACACTGCCCA-AGACTCTCAAATACATAGEST: gi|7693069|gb|AW761167.1|AW761167
genomic: CAAAAGATTAGGgtcggattgt ... gacctcccagGATCATTTTGCTGCACAGAAGACACTGCCCATA-ACTCTCAAATACATAG
EST: GAAACAAGCTTTTTCAAGATGTTGGCCTATGGATATCCCAAAAGATTAGG GATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAGEST: gi|6566092|gb|AW233852.1|AW233852
genomic: GAAACAAGCTTTTTCAAGATGTTGGCCTATGGATATCCCAAAAGATTAGGgtcggattgt ... gacctcccagGATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAG
EST: GAAACAAGCTNTNTCAAGATGTTGGCCTATGGATATCCCAAAAGATTACG GATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAG
genomic: GAAACAAGCTTTTTCAAGATGTTGGCCTATGGATATCCCAAAAGATTAGGgtcggattgt ... gacctcccagGATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAG
ttttatttgccaattttttcacaactggtttatgaatatcattttgacctcccagGATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAG
ttttgac putative branch site (score: 3)
cctccc CT-rich tract
tttatgaatatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatttaagtgatagaaattagactgtaaaaatatgctctatatttttatttgccaattttttcacaactggtttatgaatatcattttgacctcccagGATCATTTTGCTGCACAGAAGACACTGCCCATAACTCTCAAATACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC