1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgttcttttgcatttatcattttaagttgcattgacttgcccttgttgataattttttttcttttttgtttaaaagGTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCAAAAGGTGCTTGGCCTTTTTCAACTGGAGATCATGGATGGCCAATTTCTG
species | Glycine max |
transcript | GLYMA01G00430.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATTTGGTCCAACTATAAGAAAAGCTCATACCTATATTAAGAATTCACAG GTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCAEST: gi|18733901|gb|BM527876.1|BM527876
genomic: AATTTGGTCCAACTATAAGAAAAGCTCATACCTATATTAAGAATTCACAGgtgttctttt ... tgtttaaaagGTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCA
EST: AATTTGGTCCAACTATAAGAAAAGCTCATACCTATATTAAGAATTCACAG GTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCAEST: gi|18732433|gb|BM527041.1|BM527041
genomic: AATTTGGTCCAACTATAAGAAAAGCTCATACCTATATTAAGAATTCACAGgtgttctttt ... tgtttaaaagGTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCA
EST: AAAGCTCATACCTATATTAAGAATTCACAG GTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCAEST: gi|19269470|gb|BM885726.1|BM885726
genomic: AAAGCTCATACCTATATTAAGAATTCACAGgtgttctttt ... tgtttaaaagGTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCA
EST: AATTTGGTCCAACTATAAGAAAAGCTCATACCTATATTAAGAATTCACAG GTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCAEST: gi|213590932|gb|DB973729.1|DB973729
genomic: AATTTGGTCCAACTATAAGAAAAGCTCATACCTATATTAAGAATTCACAGgtgttctttt ... tgtttaaaagGTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCA
EST: AATTTGGTCCAACTATAAGAAAAGCTCATACCTATATTAAGAATTCACAG GTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCA
genomic: AATTTGGTCCAACTATAAGAAAAGCTCATACCTATATTAAGAATTCACAGgtgttctttt ... tgtttaaaagGTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCA
ttaagttgcattgacttgcccttgttgataattttttttcttttttgtttaaaagGTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCAAAAGGTGCTTGGCCTTTTTCAACTGGAGATCATGGATGGCCAATTTCTG
taattttttttctttt CT-rich tract
ttgttgataatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttcttttgcatttatcattttaagttgcattgacttgcccttgttgataattttttttcttttttgtttaaaagGTTTTAGAAGATTGTCCAGGTGATCTTAATAAATGGTACCGTCACATTTCAAAAGGTGCTTGGCCTTTTTCAACTGGAGATCATGGATGGCCAATTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA