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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcatacaaaaaaagaagagtgattgcagcagggctgtatatatctgtattatgtatacttttgtgttttcatgttacttatttgaatgtttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAACTTTCCAG

Basic information

species Glycine max
transcript GLYMA0084S00210.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31466779|gb|CD408807.1|CD408807
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|120495393|gb|EH223560.1|EH223560
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|213615448|gb|DB965520.1|DB965520
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCAC--TTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|19348874|gb|BM893406.1|BM893406
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAAGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|209724770|gb|BW672552.1|BW672552
EST:     CTTGTACGTGAAGTACTTGTTGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|209707531|gb|BW664990.1|BW664990
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|214006768|gb|DB987650.1|DB987650
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|209727805|gb|BW658729.1|BW658729
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|192314929|gb|FK010747.1|FK010747
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|15662186|gb|BI699557.1|BI699557
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|214009602|gb|DB988311.1|DB988311
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|51343312|gb|CO984045.1|CO984045
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|31465032|gb|CD407060.1|CD407060
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCNAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|120529184|gb|EH257318.1|EH257318
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|5752808|gb|AI960095.1|AI960095
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
EST: gi|5761024|gb|AI966387.1|AI966387
EST:     CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAG                         TTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC
genomic: CTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCAGgtaaaaccca ... ttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattatgtatacttttgtgttttcatgttacttatttgaatgtttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAACTTTCCAG
                                            tttcatttt  CT-rich tract
                                 ttatttgaatgtttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcatacaaaaaaagaagagtgattgcagcagggctgtatatatctgtattatgtatacttttgtgttttcatgttacttatttgaatgtttcattttagTTGTGCTAGGGGTAGCCCAAAGAGACATATACTTTATCAGAAAACTGGAACTTTCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
-tcataca
- - - - - aaaagaa
- - - - - - - - - - - - tgcagca
- - - - - - - - - - - - - - - - ggctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgt