1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactctctctctctctctctctctctaacaatgtcaccaatccaatctcgcaccaatgctatctattattatgcatgccttttcagGTCAATTCGAGTTGGAGAATCTCCGCAAAGAATTTAACAAGATCAACAAGGAAGTCTCCAAACTCAAGCGT
species | Glycine max |
transcript | GLYMA20G37700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCGAAGTCGTCGACGAGGTCATCAATCTCGACAAAGAATGGCGAAAGC GTCAATTCGAGTTGGAGAATCTCCGCAAAGAATTTAACAAGATCAACAAGGEST: gi|208074175|gb|GD870374.1|GD870374
genomic: CGTCGAAGTCGTCGACGAGGTCATCAATCTCGACAAAGAATGGCGAAAGCgtactctctc ... gccttttcagGTCAATTCGAGTTGGAGAATCTCCGCAAAGAATTTAACAAGATCAACAAGG
EST: CGTCGAAGTCGTCGACGAGGTCATCAATCTCGACAAAGAATGGCGAAAGC GTCAATTCGAGTTGGAGAATCTCCGCAAAGAATTTAACAAGATCAACAAGG
genomic: CGTCGAAGTCGTCGACGAGGTCATCAATCTCGACAAAGAATGGCGAAAGCgtactctctc ... gccttttcagGTCAATTCGAGTTGGAGAATCTCCGCAAAGAATTTAACAAGATCAACAAGG
tgtcaccaatccaatctcgcaccaatgctatctattattatgcatgccttttcagGTCAATTCGAGTTGGAGAATCTCCGCAAAGAATTTAACAAGATCAACAAGGAAGTCTCCAAACTCAAGCGT
tgccttttc CT-rich tract
tatctattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctctctctctctctctctctctaacaatgtcaccaatccaatctcgcaccaatgctatctattattatgcatgccttttcagGTCAATTCGAGTTGGAGAATCTCCGCAAAGAATTTAACAAGATCAACAAGGAAGTCTCCAAACTCAAGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA