1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gatttgattcttttgaaattaaattcgtggaaatgatgagagactgagaatggggattgacttattttttattttttattttactttttgcttgttttagTTCAAGAGAACATGGTAACTAGAATTGTGGATCTTCGGTCAGACACAGTTACAAAGCCAACCGAAGCAATGAGAGCTGCTATGGCAAGTGCTGAAGTTGA
species | Glycine max |
transcript | GLYMA20G36590.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCATGCGTAATGTCCTTGCAG TTCAAGAGAACATGGTAACTAGAATTGTGGATCTTCGGTCAGACACAGTTAEST: gi|193641609|gb|FK592435.1|FK592435
genomic: TTGCATGCGTAATGTCCTTGCAGgtattgcgtg ... cttgttttagTTCAAGAGAACATGGTAACTAGAATTGTGGATCTTCGGTCAGACACAGTTA
EST: CACGCCT--GTGGGTTGTCTTGCATCATTGCATACGTAATGTCCTTGCAG TTCAAGAGAACATGGTAACTAGAATTGTGGATCTTCGGT
genomic: CACGCCTTCGTGGGTTGTCTTGCATCATTGCATGCGTAATGTCCTTGCAGgtattgcgtg ... cttgttttagTTCAAGAGAACATGGTAACTAGAATTGTGGATCTTCGGT
gagaatggggattgacttattttttattttttattttactttttgcttgttttagTTCAAGAGAACATGGTAACTAGAATTGTGGATCTTCGGTCAGACACAGTTACAAAGCCAACCGAAGCAATGAGAGCTGCTATGGCAAGTGCTGAAGTTGA
gattgac putative branch site (score: 3)
ttttttattttttatt putative PPT
ttattttttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttgattcttttgaaattaaattcgtggaaatgatgagagactgagaatggggattgacttattttttattttttattttactttttgcttgttttagTTCAAGAGAACATGGTAACTAGAATTGTGGATCTTCGGTCAGACACAGTTACAAAGCCAACCGAAGCAATGAGAGCTGCTATGGCAAGTGCTGAAGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG