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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcattctcgctctctctaattttgtttcattcgtaccaatttgaaaacgtaatcagttgtgtgaattctaatgtgtttgtagTGAGTGCAATGAAGGCGTTGAAAGAGTCGCTGCGTGTTCCTGATAGAATGGGTTGGAATGGTGATCCCTGTGCTCCTACTAATTGGGATGCTTGGGAGGG

Basic information

species Glycine max
transcript GLYMA20G32720.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32720.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G022897_T01 (Zea mays), 3'ss of exon 2
--gtctcattctcgctctctctaatt---ttgtttcat-tcgtaccaatttgaaaa------cgtaatcagttgtgtgaattctaat-----------gtgtttgtagTGAGTGCAATGAAGGCGTTGAAAGAGTCGCTGCGTGTTCCTGATAGAATGGGTTGGAATGGTGATCCCTGTGCTCCTACTAATTGGGATGCTTGGGAGGG
  |    |||||     | | |   |    || |  || |  ||  |   |  |||      |   |  |  | ||    |   |             || |||| ||||  |||||||||||||||||| |||||||||    ||||||  || ||||||||||||||||| || ||||| || |     |||||||| ||||||||
gtgatcaattctgaagatttttggctggactgctcaatatattaggagcctacaaaattgccccctactacctctgcccctctcagcttcttgcattggtttttgcagTGGCTGCAATGAAGGCGTTGAAGGAGTCGCTGAAAATTCCTGCCAGGATGGGTTGGAATGGTGACCCTTGTGCACCGAGGGCATGGGATGCATGGGAGGG

upper sequence: GLYMA20G32720.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G25570.1 (Arabidopsis thaliana), 3'ss of exon 2
----------------------------------------gtctcattctcgctctctctaatt--ttgtttcattcgtaccaattt---gaaaacgtaatcagttgtgtgaattctaatgt--gtttgt-----agTGAGTGCAATGAAGGCGTTGAAAGAGTCGCTGCGTGTTCCTGATAGAATGGGTTGGAATGGTGATCCCTGTGCTCCTACTAATTGGGATGCTTGGGAGGG
                                        |   |||  | | | |||  | ||  |||      |  ||  |  ||   |||||  |  || || |  |   ||  | | |  ||||||     ||||| ||| ||||| || ||||| || || || ||||||||||||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||
gtacgtcaagttaaggatactcactgttgtttgatggattgcaacatcatgggtttcttgatttgattggagttctgataatagctttgagaaaaactggtctgtggcatatttttgactctctgtttgttttacagTGACTGCTATGAAAGCATTGAAGGATTCACTACGTGTTCCTGATAGAATGGGTTGGAATGGTGATCCTTGTGCTCCTACTAGCTGGGACGCTTGGGAGGG

upper sequence: GLYMA20G32720.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g03060.t01 (Vitis vinifera), 3'ss of exon 2
-------------gtctcattctcgctctctctaattttgtttcattcgtaccaatttgaaaacgtaatcagttgtgtgaattcta---atgtgtttgtagTGAGTGCAATGAAGGCGTTGAAAGAGTCGCTGCGTGTTCCTGATAGAATGGGTTGGAATGGTGATCCCTGTGCTCCTACTAATTGGGATGCTTGGGAGGG
              | | |  |         |||||  |||   |  |     | |||| ||  || ||  || || | | |  |    |||| | |  ||||| ||| ||||  || |||||||| || || ||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
atgtattttgtcaatgtgaaaccaatgggtcctaataatgtgggaaaccctttattttgcaa-tgtgatgtgtggtttaattattgggcatgtttctccagTGATTGCTATGAGAGCATTGAAAGAATCTCTTCGTATTCCGGCTAGAATGGGTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcgtaccaatttgaaaacgtaatcagttgtgtgaattctaatgtgtttgtagTGAGTGCAATGAAGGCGTTGAAAGAGTCGCTGCGTGTTCCTGATAGAATGGGTTGGAATGGTGATCCCTGTGCTCCTACTAATTGGGATGCTTGGGAGGG
                                      ttctaat  putative branch site (score: 2)
          aatttgaaaa  TA-rich tract