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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacatcttaaatgaatttaatttagtgagtgaacataataaagtgatgaggaaaatgaaggaattagggatgtgacgatatttgttggggatatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCTTTGGGTAGGAACAATGCAATTGATGGAACGTGTGGAG

Basic information

species Glycine max
transcript GLYMA20G27990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G27990.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G018375_T02 (Zea mays), 3'ss of exon 1
aacatcttaaatgaatttaatttagtgagtgaacataataaagtgatgaggaaaat----gaaggaattagggatgtgacgatatttgt-tggggatatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCTTTGGGTAGGAACAATGCAATTGATGGAAC-GTGTGGAG
                | | |   | |   ||  ||| | | || ||   || | |    |||  ||| ||| || || | | | |||| ||  | |  |||||||| ||||||||||| || |||||||| || || ||||||||||| ||  ||||| | |||||  |||| |||  ||| ||  | || || ||  ||| |  
---------------gtcagtagtgaggaagacaatactcatgtcattgcgatactcactgaatcaatgaggaatatgtctaaaattgtctgttggttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC-

upper sequence: GLYMA20G27990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0116g00530.t01 (Vitis vinifera), 3'ss of exon 1
--------------aacatcttaaatgaatttaatttagtgagtgaacataataaagtga----tgaggaaaatgaaggaattagggatgtgacgata--tttgttggggatatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCTTTGGGTAGGAACAATGCAATTGATGGAACGTGTGGAG
              ||| |   || |  |    | ||      |  ||  || | ||       |||  |   |||  | |||       ||  | ||  ||| || |     ||| |||||||| || |||||||| ||||||||||| ||||||||||| || |||||||| |||| |||  ||||   |  ||| || |||||||| |  |    ||
gtaatttctgaaaaaactttccaattccaccatagttttcccatccaccaaacagaggagctcttgactaccctgattgtattgcttccttgcggttaattttctttgctgatttttcagGGTCCTACCTTTGGGGCTATGATGATATCGGGGCAGAAGGCTGCACATTTGGCATTGAGGGCGCTGGGGCAGCCCAACGCCATTGATGGGAACTACACAG

upper sequence: GLYMA20G27990.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ04508 (Selaginella moellendorffii), 3'ss of exon 1
aacatcttaaatgaatttaatttagtgagtgaacataataaagtgatgaggaaaatgaaggaattagggatgtgacgatatttgttggggatatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCTTTGGGTAGGAACAATGCAATTGATGGAACGTGTGGAG
                                      ||||| | |        |       ||  |   ||    |  ||| | ||      || ||||| ||||| ||||| ||||||||||| || ||||||||||| ||||| |||||  | ||| |  |||| | |  |||||| || ||||||||       |
-------------------------------------gtaaagaggtttttgttctttctttgtt--gtccgtcttaacgtttctcgg------ttccagGGGCCGACTTTTGGAGCGATGATGATCTCTGGGCAGAAGGCAGCTCACTTGGCTCTCAAGTCACTGGGCATGCCCAATGCCATCGATGGAACTCTCAAGG

upper sequence: GLYMA20G27990.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ26284 (Selaginella moellendorffii), 3'ss of exon 1
aacatcttaaatgaatttaatttagtgagtgaacataataaagtgatgaggaaaatgaaggaattagggatgtgacgatatttgttggggatatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCTTTGGGTAGGAACAATGCAATTGATGGAACGTGTGGAG
                                      ||||| | |        |       ||  |   ||    |  ||| | ||      || ||||| ||||| ||||| ||||||||||| || ||||||||||| ||||| |||||  | ||| |  |||| | |  |||||| || ||||||||       |
-------------------------------------gtaaagaggtttttgttctttctttgtt--gttcgtcttaacgtttctcgg------ttccagGGGCCGACTTTTGGAGCGATGATGATCTCTGGGCAGAAGGCAGCTCACTTGGCTCTCAAGTCACTGGGCATGCCCAATGCCATCGATGGAACTCTCAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401425|gb|EV271239.1|EV271239
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209706607|gb|BW667847.1|BW667847
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|15285107|gb|BI468998.1|BI468998
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|120495092|gb|EH223259.1|EH223259
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|8825742|gb|BE209408.1|BE209408
EST:     TGATTGTCACTGGCATGGAGGTTGCANAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCANGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|8669402|gb|BE190509.1|BE190509
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|120533406|gb|EH261539.1|EH261539
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|15288107|gb|BI471998.1|BI471998
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|27424298|gb|CA935818.1|CA935818
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|120490933|gb|EH219100.1|EH219100
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|13479096|gb|BG508439.1|BG508439
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209727409|gb|BW669862.1|BW669862
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|9899724|gb|BE608692.1|BE608692
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCATGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|20076064|gb|BQ094856.1|BQ094856
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209716014|gb|BW662265.1|BW662265
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|17519767|gb|BM188809.1|BM188809
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|22522745|gb|BU081556.1|BU081556
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|214008074|gb|DB988475.1|DB988475
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|120533579|gb|EH261712.1|EH261712
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|214004942|gb|DB989075.1|DB989075
EST:     GATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATCA                         GG-CCGACGTTCCGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTT
genomic: GATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAAT-Ggtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTT
EST: gi|213591278|gb|DB983020.1|DB983020
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209701142|gb|BW664217.1|BW664217
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|213603293|gb|DB981950.1|DB981950
EST:     CACTGGCATGGAGGTTGCAGAAATTGATGTCTCCCCGAGAAT-                         GCTGCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTT
genomic: CACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGT-CCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTT
EST: gi|11414187|gb|BF426198.1|BF426198
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|20448684|gb|BQ252808.1|BQ252808
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAAAATG                         GGACCGACGTTTGGGGCGATGATGATATCCGGGCACGAAGGCGGCTCCTTT
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCA-GAAGGCGGCTCATTT
EST: gi|7795424|gb|AW780749.1|AW780749
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAAGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209704176|gb|BW664794.1|BW664794
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|15287368|gb|BI471259.1|BI471259
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209728399|gb|BW654899.1|BW654899
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|120491829|gb|EH219996.1|EH219996
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209711000|gb|BW665256.1|BW665256
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|192303133|gb|FG997709.1|FG997709
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209714931|gb|BW682096.1|BW682096
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|213601062|gb|DB983737.1|DB983737
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|15664460|gb|BI701839.1|BI701839
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAAGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|9899757|gb|BE608725.1|BE608725
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|10238693|gb|BE807581.1|BE807581
EST:     TGATGG-CACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: -GATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|213604513|gb|DB980263.1|DB980263
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGGGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|17400394|gb|BM177176.1|BM177176
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCG
EST: gi|120533564|gb|EH261697.1|EH261697
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|214005260|gb|DB985102.1|DB985102
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209728264|gb|BW651701.1|BW651701
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|8669266|gb|BE190373.1|BE190373
EST:     GAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGTTCATTTG
genomic: GAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST: gi|209711721|gb|BW676860.1|BW676860
EST:     TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATG                         GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACTGGCATGGAGGTTGCAGAAATTGATGGCTCCCCGAGAATGgtatgcactt ... atatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaggaaaatgaaggaattagggatgtgacgatatttgttggggatatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCTTTGGGTAGGAACAATGCAATTGATGGAACGTGTGGAG
                                atatttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aacatcttaaatgaatttaatttagtgagtgaacataataaagtgatgaggaaaatgaaggaattagggatgtgacgatatttgttggggatatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCTTTGGGTAGGAACAATGCAATTGATGGAACGTGTGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - -tgagtga
- - - - - - - - - - - - - - - - - - - - - -tgatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggg