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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaaattccaagagattttactcatttatttttcgaaataattggaatttaataatttgatattttgttaaaatttttggtccaatagATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTG

Basic information

species Glycine max
transcript GLYMA20G24070.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718151|gb|BW677422.1|BW677422
EST:     CAGTTACTCTTTCATTCTTTAACGTTCGCACACTCCGTCTTCAAACCAAG                         ATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTC
genomic: CAGTTACTCTTTCATTCTTTAACGTTCGCACACTCCGTCTTCAAACCAAGgttgaaattc ... ggtccaatagATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTC
EST: gi|209701922|gb|BW664576.1|BW664576
EST:     CAGTTACTCTTTCATTCTTTAACGTTCGCACACTCCGTCTTCAAACCAAG                         ATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTC
genomic: CAGTTACTCTTTCATTCTTTAACGTTCGCACACTCCGTCTTCAAACCAAGgttgaaattc ... ggtccaatagATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTC
EST: gi|209698692|gb|BW656517.1|BW656517
EST:     CAGTTACTCTTTCATTCTTTAACGTTCGCACACTCCGTCTTCAAACCAAG                         ATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTC
genomic: CAGTTACTCTTTCATTCTTTAACGTTCGCACACTCCGTCTTCAAACCAAGgttgaaattc ... ggtccaatagATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTC
EST: gi|209713872|gb|BW684065.1|BW684065
EST:     AGTTACTCTTTCATTCTTTAACGTTCGCACACTCCGTCTTCAAACCAAG                         ATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTC
genomic: AGTTACTCTTTCATTCTTTAACGTTCGCACACTCCGTCTTCAAACCAAGgttgaaattc ... ggtccaatagATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaaataattggaatttaataatttgatattttgttaaaatttttggtccaatagATCCGTGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTG
     taattggaatttaata  TA-rich tract