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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtattcttttcactttcccttttcttttctgcatcagttttcttcaattttgtgattttcttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCAGTGATCGCTGCCTCTCCCTTTCCCCTCTTTCCAAA

Basic information

species Glycine max
transcript GLYMA20G23970.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532027|gb|EH260160.1|EH260160
EST:     TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|151406646|gb|EV276461.1|EV276461
EST:     TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|254328089|gb|GR835054.1|GR835054
EST:     CAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: CAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|193313543|gb|FK278742.1|FK278742
EST:     CAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: CAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|7796356|gb|AW781753.1|AW781753
EST:     CAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: CAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|9563944|gb|BE473453.1|BE473453
EST:     TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTCACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCACACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccttttcttttctgcatcagttttcttcaattttgtgattttcttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCAGTGATCGCTGCCTCTCCCTTTCCCCTCTTTCCAAA
                                      tgattttcttttttc  CT-rich tract
                               aattttgtgattttct  TA-rich tract