1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tctgtttttatgaagcctgttcactgcaattttgcttctgaaaaaaaaggatatatatatatatatatattaattatggtggaattgttcattctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAGCGAAGATGACATCGGTTGGTGTGGCACCAACTTCGGGTTTGAGAGAAGC
species | Glycine max |
transcript | GLYMA20G22600.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTCTTCCTTCTAACCGCTGTTTCCGCATCTCGCTTCCTTCCCAAACT GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAGEST: gi|193701051|gb|FK637738.1|FK637738
genomic: TTTCTCTTCCTTCTAACCGCTGTTTCCGCATCTCGCTTCCTTCCCAAACTgtagattcgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: TTTCTCTTCCTTCTAACCGCTGTTTCCGCATCTCGCTTCCTTCCCAAACT GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAGEST: gi|209720625|gb|BW654452.1|BW654452
genomic: TTTCTCTTCCTTCTAACCGCTGTTTCCGCATCTCGCTTCCTTCCCAAACTgtagattcgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: TCTAACCGCTGTTTCCGCATCTCGCTTCCTTCCCAAACT GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAGEST: gi|213616715|gb|DB971240.1|DB971240
genomic: TCTAACCGCTGTTTCCGCATCTCGCTTCCTTCCCAAACTgtagattcgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: TTTCTCTTCCTTCTAACCGCTGTTTCCGCATCTCGCTTCCTTCCCAAACT GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: TTTCTCTTCCTTCTAACCGCTGTTTCCGCATCTCGCTTCCTTCCCAAACTgtagattcgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
aaaggatatatatatatatatatattaattatggtggaattgttcattctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAGCGAAGATGACATCGGTTGGTGTGGCACCAACTTCGGGTTTGAGAGAAGC
tattaat putative branch site (score: 2)
ttcattct putative PPT
atatatatatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtttttatgaagcctgttcactgcaattttgcttctgaaaaaaaaggatatatatatatatatatattaattatggtggaattgttcattctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAGCGAAGATGACATCGGTTGGTGTGGCACCAACTTCGGGTTTGAGAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC